YRC Public Data Repository - Protein Structure Prediction

Protein:	DTD1_MOUSE
Organism:	Mus musculus
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTD1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114681167 - gi\|114681167\|ref\|XP_514535.2\| PREDICTED: similar to Probable D-tyrosyl-tRNA(Tyr) deacylase [Pan trog...	338.0	[0..1]	[209..97]
gi\|109093075 - gi\|109093075\|ref\|XP_001089216.1\| PREDICTED: similar to Probable D-tyrosyl-tRNA(Tyr) deacylase [Macac...	337.0	[0..1]	[209..81]
DTD1 - D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	333.0	[0..1]	[209..1]
gi\|74182780 - gi\|74182780\|dbj\|BAE34719.1\| unnamed protein product [Mus musculus]	325.0	[0..1]	[209..1]
gi\|166796825, gi... - gi\|62645971\|ref\|XP_342533.2\| PREDICTED: similar to histidyl tRNA synthetase 2 [Rattus norvegicus], g...	325.0	[0..1]	[209..1]
DTD1_BOVIN - D-tyrosyl-tRNA(Tyr) deacylase 1 OS=Bos taurus GN=DTD1 PE=2 SV=1	324.0	[0..1]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVVQRVTR ASVTVGGEQI SAIGRGICVL LGISMEDSQK ELEHMVRKIL NLRVFEDESG  60
   61 KHWSKSVMDK EYEVLCVSQF TLQCVLKGNK PDFHLAMPTE QAESFYNSFL EQLRKSYRPE 120
  121 LIRDGKFGAY MQVHIQNDGP VTIELESPAP GAASSDPKQL SKLEKQQQRK EKTRAKGPSE 180
  181 SSKERNAPRK EDRSASSGAE GDVSSEREP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.69897
Match:	2okvA
Description:	No description for 2okvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits