YRC Public Data Repository - Protein Structure Prediction

Protein:	VMAC_MOUSE
Organism:	Mus musculus
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMAC_MOUSE.

Description	E-value	Query Range	Subject Range
VMAC_RAT - Vimentin-type intermediate filament-associated coiled-coil protein OS=Rattus norvegicus GN=Vmac PE=2...	265.0	[0..1]	[174..1]
gi\|74219117 - gi\|74219117\|dbj\|BAE26699.1\| unnamed protein product [Mus musculus]	243.0	[0..18]	[174..1]
gi\|55648037 - gi\|55648037\|ref\|XP_512306.1\| PREDICTED: vimentin-type IF-associated coiled-coil protein [Pan troglod...	229.0	[0..1]	[174..1]
VMAC - vimentin-type intermediate filament associated coiled-coil protein	229.0	[0..1]	[174..1]
gi\|109123078 - gi\|109123078\|ref\|XP_001086379.1\| PREDICTED: similar to vimentin-type IF-associated coiled-coil prote...	227.0	[0..1]	[174..1]
VMAC_BOVIN - Vimentin-type intermediate filament-associated coiled-coil protein OS=Bos taurus GN=VMAC PE=2 SV=1	218.0	[0..1]	[174..1]
gi\|73987272 - gi\|73987272\|ref\|XP_854558.1\| PREDICTED: similar to vimentin-type IF-associated coiled-coil protein [...	210.0	[0..1]	[174..1]
gi\|68436313 - gi\|68436313\|ref\|XP_699560.1\| PREDICTED: similar to LOC515212 protein [Danio rerio]	156.0	[0..1]	[174..1]
gi\|56755235 - gi\|56755235\|gb\|AAW25797.1\| SJCHGC05947 protein [Schistosoma japonicum]	59.0	[0..5]	[132..8]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPPPLQIR EANAHLAAVH RRAAELERRL LAAERTIGAQ AERLACHDQH LRAALDELGR  60
   61 AKDREISALQ EQLLSSEATV RSLQAAVDQR DQMIQQLQPR ADLLQDITRH RPPLAALLAT 120
  121 LEEAEELGPL PASHSHRAQL LPDGPGPPLG NNMGKEEGQD DQDDQQPAVF GTTV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.74
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits