YRC Public Data Repository - Protein Structure Prediction

Protein:	PDCD5_MOUSE
Organism:	Mus musculus
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDCD5_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|27731143, gi\|... - gi\|27731143\|ref\|XP_214911.1\| PREDICTED: similar to Programmed cell death protein 5 (TFAR19 protein) ...	140.0	[0..1]	[124..1]
gi\|61370000, gi\|... - gi\|61370000\|gb\|AAX43425.1\| programmed cell death 5 [synthetic construct], gi\|61368717\|gb\|AAX43226.1\|...	139.0	[0..1]	[124..1]
gi\|48145985 - gi\|48145985\|emb\|CAG33215.1\| PDCD5 [Homo sapiens]	138.0	[0..1]	[124..1]
PDCD5_BOVIN - Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3	137.0	[0..1]	[124..1]
gi\|62859829 - gi\|62859829\|ref\|NP_001017011.1\| programmed cell death 5 [Xenopus (Silurana) tropicalis]	131.0	[0..1]	[124..1]
gi\|54311185, gi\|... - gi\|54311185\|gb\|AAH84757.1\| LOC495300 protein [Xenopus laevis], gi\|148237996\|ref\|NP_001088436.1\| hypo...	129.0	[0..1]	[124..1]
gi\|41055911, gi\|... - gi\|94734340\|emb\|CAK04543.1\| programmed cell death 5 [Danio rerio], gi\|47940352\|gb\|AAH71345.1\| Progra...	129.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEELEALR KQRLAELQAK HGDPGDAAQQ EAKQREAEMR NSILAQVLDQ SARARLSNLA  60
   61 LVKPEKTKAV ENYLIQMARY GQLSGKVSEQ GLIEILEKVS QQTEKKTTVK FNRRKVMDSD 120
  121 EDDADY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2cruA
Description:	Solution structure of programmed cell death 5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits