YRC Public Data Repository - Protein Structure Prediction

Protein:	NINJ1_MOUSE
Organism:	Mus musculus
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NINJ1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114625612 - gi\|114625612\|ref\|XP_528716.2\| PREDICTED: similar to NINJ1 protein [Pan troglodytes]	265.0	[0..1]	[152..314]
gi\|73947188 - gi\|73947188\|ref\|XP_853215.1\| PREDICTED: similar to ninjurin 1 [Canis familiaris]	255.0	[0..1]	[152..158]
gi\|109112346 - gi\|109112346\|ref\|XP_001108521.1\| PREDICTED: similar to ninjurin 1 [Macaca mulatta]	251.0	[0..1]	[152..58]
gi\|17939561 - gi\|17939561\|gb\|AAH19336.1\| NINJ1 protein [Homo sapiens]	251.0	[0..1]	[152..9]
gi\|61373085, gi\|... - gi\|61373088\|gb\|AAX43976.1\| ninjurin 1 [synthetic construct], gi\|61373085\|gb\|AAX43975.1\| ninjurin 1 [...	248.0	[0..1]	[152..1]
NINJ1_RAT - Ninjurin-1 OS=Rattus norvegicus GN=Ninj1 PE=1 SV=1	244.0	[0..1]	[152..1]
gi\|26346484 - gi\|26346484\|dbj\|BAC36893.1\| unnamed protein product [Mus musculus]	243.0	[0..1]	[152..1]
gi\|76610341 - gi\|76610341\|ref\|XP_586318.2\| PREDICTED: similar to ninjurin 1 [Bos taurus]	232.0	[0..1]	[152..69]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGTEEYEL NGDLRPGSPG SPDALPPRWG LRNRPINVNH YANKKSAAES MLDIALLMAN  60
   61 ASQLKAVVEQ GNDFAFFVPL VVLISISLVL QIGVGVLLIF LVKYDLNNPA KHAKLDFLNN 120
  121 LATGLVFIIV VVNIFITAFG VQKPVMDVAP RQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	70.721246
Match:	PF04923.3
Description:	No description for PF04923.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits