YRC Public Data Repository - Protein Structure Prediction

Protein:	RPB11_MOUSE
Organism:	Mus musculus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPB11_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73957788 - gi\|73957788\|ref\|XP_546937.2\| PREDICTED: similar to RAS p21 protein activator 4 [Canis familiaris]	180.0	[0..1]	[117..992]
gi\|109066247 - gi\|109066247\|ref\|XP_001114618.1\| PREDICTED: similar to DNA-directed RNA polymerase II subunit J (DNA...	168.0	[0..1]	[117..75]
gi\|62088376 - gi\|62088376\|dbj\|BAD92635.1\| MGC13098 protein variant [Homo sapiens]	157.0	[0..1]	[106..23]
gi\|47211212 - gi\|47211212\|emb\|CAF90169.1\| unnamed protein product [Tetraodon nigroviridis]	157.0	[0..1]	[117..1]
gi\|169146277, gi... - gi\|68361602\|ref\|XP_683502.1\| PREDICTED: hypothetical protein XP_678410 [Danio rerio], gi\|66773140\|re...	155.0	[0..1]	[117..1]
gi\|46097891, gi\|... - gi\|71011575\|ref\|XP_758471.1\| hypothetical protein UM02324.1 [Ustilago maydis 521], ref\|XP_399939.1\| ...	155.0	[0..2]	[116..3]

Back

Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAPPAFESF LLFEGEKKIT INKDTKVPNA CLFTINKEDH TLGNIIKSQL LKDPQVLFAG  60
   61 YKVPHPLEHK IIIRVQTTPD YSPQEAFTNA ITDLISELSL LEERFRGAIK DKQEGIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	1i3qK
Description:	RPB11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits