YRC Public Data Repository - Protein Structure Prediction

Protein:	TKN1_MOUSE
Organism:	Mus musculus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TKN1_MOUSE.

Description	E-value	Query Range	Subject Range
TKN1_RAT - Protachykinin-1 OS=Rattus norvegicus GN=Tac1 PE=2 SV=2	255.0	[0..1]	[130..1]
gi\|73975838 - gi\|73975838\|ref\|XP_850435.1\| PREDICTED: similar to Protachykinin 1 precursor (PPT) isoform 3 [Canis ...	252.0	[0..1]	[130..1]
gi\|109067409 - gi\|109067409\|ref\|XP_001089871.1\| PREDICTED: tachykinin, precursor 1 (substance K, substance P, neuro...	251.0	[0..1]	[129..1]
TKN1_MESAU - Protachykinin-1 OS=Mesocricetus auratus GN=TAC1 PE=2 SV=1	250.0	[0..1]	[130..1]
TAC1 - tachykinin, precursor 1 gi\|123982550, gi... - gi\|60823658\|gb\|AAX36651.1\| tachykinin precursor 1 [synthetic construct], gi\|123997215\|gb\|ABM86209.1\|...	248.0	[0..1]	[129..1]
gi\|114614668 - gi\|114614668\|ref\|XP_001171112.1\| PREDICTED: tachykinin 1 isoform 4 [Pan troglodytes]	248.0	[0..1]	[129..1]
TKN1_BOVIN - Protachykinin-1 OS=Bos taurus GN=TAC1 PE=1 SV=2	247.0	[0..1]	[130..1]
gi\|4454350 - gi\|4454350\|emb\|CAA90649.1\| beta preprotachykinin I [Tupaia belangeri]	246.0	[0..1]	[129..1]
gi\|4454091 - gi\|4454091\|emb\|CAA90647.1\| beta preprotachykinin I [Cavia porcellus]	245.0	[0..1]	[130..1]

Back

Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILVAVAVF FLVSTQLFAE EIDANDDLNY WSDWSDSDQI KEAMPEPFEH LLQRIARRPK  60
   61 PQQFFGLMGK RDADSSVEKQ VALLKALYGH GQISHKRHKT DSFVGLMGKR ALNSVAYERS 120
  121 AMQNYERRRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.747	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.528	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.507	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.464	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.349	d.95.2	Homing endonucleases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits