YRC Public Data Repository - Protein Structure Prediction

Protein:	BTC_MOUSE
Organism:	Mus musculus
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BTC_MOUSE.

Description	E-value	Query Range	Subject Range
FAT3_RAT - Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1	147.0	[0..7]	[164..4035]
gi\|94386883, gi\|... - gi\|94386883\|ref\|XP_979253.1\| PREDICTED: similar to fat3 isoform 2 [Mus musculus], gi\|82929635\|ref\|XP...	145.0	[0..7]	[164..4031]
gi\|114639799 - gi\|114639799\|ref\|XP_001136982.1\| PREDICTED: similar to fat3 [Pan troglodytes]	137.0	[0..7]	[164..4080]
gi\|89034209 - gi\|89034209\|ref\|XP_931292.1\| PREDICTED: similar to fat3 [Homo sapiens]	137.0	[0..7]	[164..4080]
gi\|109108293 - gi\|109108293\|ref\|XP_001084587.1\| PREDICTED: similar to fat3 [Macaca mulatta]	137.0	[0..7]	[164..4088]
gi\|50731177 - gi\|50731177\|ref\|XP_417202.1\| PREDICTED: similar to fat3; fat3 protein [Gallus gallus]	136.0	[0..6]	[176..4740]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPTAPGSSV SSLPLLLVLA LGLAILHCVV ADGNTTRTPE TNGSLCGAPG ENCTGTTPRQ  60
   61 KVKTHFSRCP KQYKHYCIHG RCRFVVDEQT PSCICEKGYF GARCERVDLF YLQQDRGQIL 120
  121 VVCLIVVMVV FIILVIGVCT CCHPLRKHRK KKKEEKMETL DKDKTPISED IQETNIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1tozA
Description:	NMR structure of the human NOTCH-1 ligand binding region
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits