| Protein: | EMD_MOUSE |
| Organism: | Mus musculus |
| Length: | 259 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMD_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
320.0 | [0..1] | [259..1] |
|
|
307.0 | [0..1] | [259..1] |
|
|
298.0 | [0..1] | [259..1] |
|
|
293.0 | [0..1] | [259..1] |
|
|
282.0 | [0..1] | [255..1] |
|
|
281.0 | [0..1] | [255..1] |
|
Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MDDYAVLSDT ELAAVLRQYN IPHGPIVGST RKLYEKKIFE YETQRRRLLP PNSSSSSFSY 60
61 QFSD
|
| Detection Method: |  |
| Confidence: | 13.0 |
| Match: | 1jeiA |
| Description: | Inner nuclear membrane protein emerin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| lamin binding | 4.39382764264433 | bayes_pls_golite062009 |
| binding | 2.48575835933363 | bayes_pls_golite062009 |
| protein binding | 1.25020901551294 | bayes_pls_golite062009 |
|
Region A: Residues: [65-149] |
1 11 21 31 41 51
| | | | | |
1 LDSAAVDSDM YDLPKKEDAL LYQSKDYNDD YYEESYLTTK TYGEPESVGM SKSFRQPGTS 60
61 LVDADTFHHQ VRDDIFSSLE EEGKD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.208 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.224 | g.53.1 | TAZ domain |
|
Region A: Residues: [150-259] |
1 11 21 31 41 51
| | | | | |
1 RERLIYGQDS AYQSIAHYRP ISNVSRSSLG LSYYPTSSTS SVSSSSSSPS SWLTRRAIRP 60
61 EKQAPAAALG QDRQVPLWGQ LLLFLVFAAF LLFVYYSIQA EEGNPFWMDP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
