YRC Public Data Repository - Protein Structure Prediction

Protein:	RL18_HALWD
Organism:	Haloquadratum walsbyi DSM 16790
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL18_HALWD.

Description	E-value	Query Range	Subject Range
gi\|28630253 - gi\|28630253\|gb\|AAN73355.1\| ribosomal protein L5 [Branchiostoma lanceolatum]	219.0	[0..2]	[205..1]
gi\|44966839 - gi\|44966839\|gb\|AAS49560.1\| ribosomal protein L5 [Protopterus dolloi]	219.0	[0..2]	[205..1]
gi\|114557920 - gi\|114557920\|ref\|XP_513564.2\| PREDICTED: similar to MSTP030 [Pan troglodytes]	217.0	[0..2]	[205..120]
gi\|44966788 - gi\|44966788\|gb\|AAS49559.1\| ribosomal protein L5 [Latimeria chalumnae]	216.0	[0..2]	[205..1]
gi\|49528778, gi\|... - gi\|50294105\|ref\|XP_449464.1\| hypothetical protein CAGL0M02695g [Candida glabrata CBS138], gi\|4952877... gi\|49528778 - gi\|49528778\|emb\|CAG62440.1\| unnamed protein product [Candida glabrata]	216.0	[0..2]	[204..11]
gi\|41350988, gi\|... - gi\|41350988\|gb\|AAH65687.1\| Ribosomal protein L5a [Danio rerio], gi\|41054305\|ref\|NP_956050.1\| ribosom...	216.0	[0..2]	[205..11]
RL5_CHICK - 60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2	216.0	[0..2]	[193..11]
RL5_YEAST - 60S ribosomal protein L5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL5 PE=1 SV=4 gi\|207340613 - gi\|207340613\|gb\|EDZ68910.1\| YPL131Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407827 - gi\|190407827\|gb\|EDV11092.1\| ribosomal protein L5 [Saccharomyces cerevisiae RM11-1a] ORFP:22413 - YPL131W, Contig c384 21540-22433 RPL5 - Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 rib... gi\|151942667 - gi\|151942667\|gb\|EDN61013.1\| ribosomal protein L5 [Saccharomyces cerevisiae YJM789]	216.0	[0..2]	[204..11]
gi\|91091420 - gi\|91091420\|ref\|XP_971947.1\| PREDICTED: similar to CG17489-PA.3 [Tribolium castaneum]	215.0	[0..3]	[205..12]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGPRYKVP MRRRREVRTD YHQRLRLLKS GKPRLVARVS NRHVRAQLIT PGPDGDETHV  60
   61 AASSEHLSEY GWEAPTGNLP SAYLTGYLAG MRAIEAGLDE AVLDIGLNTA TPGNKVFVVQ 120
  121 EGAIDAGVSI PHNESVLADW SRNRGEHIAA YAEQRDEPLY NSDFDATTLP EHFDTVLETI 180
  181 QDADITMNTD ADTDNNNSQS VGDNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1s72N
Description:	REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits