YRC Public Data Repository - Protein Structure Prediction

Protein:	MPV17_MOUSE
Organism:	Mus musculus
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MPV17_MOUSE.

Description	E-value	Query Range	Subject Range
MPV17_RAT - Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1	206.0	[0..1]	[175..1]
MPV17 - MpV17 mitochondrial inner membrane protein gi\|123997607, gi... - gi\|123997607\|gb\|ABM86405.1\| MpV17 mitochondrial inner membrane protein [synthetic construct], gi\|123...	204.0	[0..1]	[175..1]
gi\|73980664 - gi\|73980664\|ref\|XP_853776.1\| PREDICTED: similar to MpV17 transgene, murine homolog, glomeruloscleros...	202.0	[0..1]	[175..112]
MPV17_BOVIN - Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1	199.0	[0..1]	[175..1]
gi\|12324641, gi\|... - gi\|30695366\|ref\|NP_564615.3\| peroxisomal membrane protein-related [Arabidopsis thaliana], pir\|\|H9656...	194.0	[0..4]	[174..170]
gi\|51858973 - gi\|51858973\|gb\|AAH82223.1\| Mpv17 protein [Xenopus laevis]	194.0	[0..3]	[175..9]
MPV17_DANRE - Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1	193.0	[0..3]	[175..4]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALWRAYQRA LAAHPWKVQV LTAGSLMGVG DMISQQLVER RGLQQHQAGR TLTMVSLGCG  60
   61 FVGPVVGGWY KVLDHLIPGT TKVHALKKML LDQGGFAPCF LGCFLPLVGI LNGM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAQDNWAKLK RDYPDALITN YYLWPAVQLA NFYLVPLHYR LAVVQCVAIV WNSYLSWKAH  60
   61 QF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.958607
Match:	PF04117.3
Description:	No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits