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View Structure Prediction Details

Protein: gi|113194755, gi...
Organism: Drosophila melanogaster
Length: 563 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113194755, gi....

Description E-value Query
Range
Subject
Range
gi|7299002, gi|2... - gi|7299002|gb|AAF54204.1| CG7549, isoform A [Drosophila melanogaster], gi|24644998|ref|NP_649775.1| ...
270.0 [0..63] [563..20]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSWSKLTANS QYVSEYTPRG TGLACGTCVL SSDFGFILDC NFKKSGLFRV RNLGGLKAHF  60
   61 GLGFSLGDEL GFPESLGNTE SDRRRAISYK NGAPPDLVGV LPSTQQQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNPPVQHPLP EKRISSRSTG AAPYNLQQVQ QQQQLQLQQQ KLQQQQLQQQ LKLKQLLLLQ  60
   61 QQQQQQQQLM TEARPLPLGV PAFRPIPQKQ LAATQPSAPS STPAERRVAV DTPEPRVSVN 120
  121 NKLVSSIDQP HSNRTFHVAN PVVSQPVAVP VFQAMPQSIA RIANVGKEHR TVSSHPNYLQ 180
  181 FEEPKFDLKD VTVEELAAAA NVTVDTIKHA IYVREQQLKA EHRA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [332-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLAAKLREEF MRTSTVRTTT TTTTTTTTTP RPQKSLAEHK VSKVMNAPKE YYPVGYDKNF  60
   61 DDNFKSKVDL PPTSFSCA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [410-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQKHFPGLYA DTDLGCMVFH VCALTDDGMV RKSFLCPENT LFDQTILKCN WWFYVDCSS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.65
Match: 1dqcA
Description: Tachycitin
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [469-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSVYDSNIP ISKSYQLMKS LTYFSKYAGG QRHEQGGDKD ENALDIDSLR ESMEGVARRQ  60
   61 EQAKKAELRV EEQRSMPKED HEHVVPAEAE QQLSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle