| Protein: | Dscam-PAD |
| Organism: | Drosophila melanogaster |
| Length: | 2017 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAD.
| Description | E-value | Query Range |
Subject Range |
|
|
1498.0 | [0..3] | [2017..3] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVNQF YGADILMEYV I
|
| Detection Method: |  |
| Confidence: | 78.09691 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [152-817] |
1 11 21 31 41 51
| | | | | |
1 RGNAAVLKCS IPSFVADFVR VESWIDEEGT ELRPSENYDG KYLVLPSGEL HIREVGPEDG 60
61 YKSYQCRTKH RLTGETRLSA TKGRLVITEP VGSVAPKISV ENRLKNAEAR IGSTFTLFCP 120
121 GQAYPVPFFR WYKFIEGTTR KQAVVLNDRV KQVSGTLIIK DAVVEDSGKY LCVVNNSVGG 180
181 ESVETVLTVT APLSAKIDPP TQTVDFGRPA VFTCQYTGNP IKTVSWMKDG KAIGHSEPVL 240
241 RIESVKKEDK GMYQCFVRND QESAEASAEL KLGGRFDPPV IRQAFQEETM EPGPSVFLKC 300
301 VAGGNPTPEI SWELDGKKIA NNDRYQVGQY VTVNGDVVSY LNITSVHAND GGLYKCIAKS 360
361 KVGVAEHSAK LNVYGLPYIR QMEKKAIVAG ETLIVTCPVA GYPIDSIVWE RDNRALPINR 420
421 KQKVFPNGTL IIENVERNSD QATYTCVAKN QEGYSARGSL EVQVMVAPKI APFDFGDEPS 480
481 NFGESASVQC LVTSGDFPVS FAWLFNGREI NENVYDVSMV KLGKKISALS IDIVRDHHAG 540
541 NYTCVAVNRA TSVNFTAELV VNVPPRWILE PTDKAFAQGS DAKVECKADG FPKPQVTWKK 600
601 AVGDTPGEYK DLKKSDNIRV EEGTLHVDNI QKTNEGYYLC EAINGIGSGL SAVIMISVQA 660
661 PPEFTE
|
| Detection Method: | |
| Confidence: | 55.69897 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [818-896] |
1 11 21 31 41 51
| | | | | |
1 KLRNQTARRG EPAVLQCEAK GEKPIGILWN MNNMRLDPKN DNRYTIREEI LSTGVMSSLS 60
61 IKRTERSDSA LFTCVATNA
|
| Detection Method: | |
| Confidence: | 37.154902 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [897-1005] |
1 11 21 31 41 51
| | | | | |
1 FGSDDASINM IVQEVPEMPY ALKVLDKSGR SVQLSWAQPY DGNSPLDRYI IEFKRSRASW 60
61 SEIDRVIVPG HTTEAQVQKL SPATTYNIRI VAENAIGTSQ SSEAVTIIT
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1ueyA |
| Description: | Solution Structure of The First Fibronectin Type III Domain of Human KIAA0343 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1006-1115] |
1 11 21 31 41 51
| | | | | |
1 AEEAPSGKPQ NIKVEPVNQT TMRVTWKPPP RTEWNGEILG YYVGYKLSNT NSSYVFETIN 60
61 FITEEGKEHN LELQNLRVYT QYSVVIQAFN KIGAGPLSEE EKQFTAEGTP
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2edxA |
| Description: | No description for 2edxA was found. |
|
Region A: Residues: [1116-1214] |
1 11 21 31 41 51
| | | | | |
1 SQPPSDTACT TLTSQTIRVG WVSPPLESAN GVIKTYKVVY APSDEWYDET KRHYKKTASS 60
61 DTVLHGLKKY TNYTMQVLAT TAGGDGVRSV PIHCQTEPD
|
| Detection Method: | |
| Confidence: | 13.39794 |
| Match: | 1x5hA |
| Description: | The solution structure of the third fibronectin type III domain of human Neogenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| pattern binding | 0.82756944920828 | bayes_pls_golite062009 |
|
Region A: Residues: [1215-1311] |
1 11 21 31 41 51
| | | | | |
1 VPEAPTDVKA LVMGNAAILV SWRPPAQPNG IITQYTVYSK AEGAETETKT QKVPHYQMSF 60
61 EATELEKNKP YEFWVTASTT IGEGQQSKSI VAMPSDQ
|
| Detection Method: | |
| Confidence: | 8.39794 |
| Match: | 1wfnA |
| Description: | The fourth FN3 domain of human sidekick-2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1312-1664] |
1 11 21 31 41 51
| | | | | |
1 VPAKIASFDD TFTATFKEDA KMPCLAVGAP QPEITWKIKG VEFSANDRMR VLPDGSLLIK 60
61 SVNRQDAGDY SCHAENSIAK DSITHKLIVL APPQSPHVTL SATTTDALTV KLKPHEGDTA 120
121 PLHGYTLHYK PEFGEWETSE VSVDSQKHNI EGLLCGSRYQ VYATGFNNIG AGEASDILNT 180
181 RTKGQKPKLP EKPRFIEVSS NSVSLHFKAW KDGGCPMSHF VVESKKRDQI EWNQISNNVK 240
241 PDNNYVVLDL EPATWYNLRI TAHNSAGFTV AEYDFATLTV TGGTIAPSRD LPELSAEDTI 300
301 RIILSNLNLV VPVVAALLVI IIAIIVICIL RSKGNHHKDD VVYNQTMGPG ATL
|
| Detection Method: | |
| Confidence: | 22.69897 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1665-1831] |
1 11 21 31 41 51
| | | | | |
1 DKRRPDLRDE LGYIAPPNRK LPPVPGSNYN TCDRIKRGRG GLRSNHSTWD PRRNPNLYEE 60
61 LKAPPVPMHG NHYGHAHGNA ECHYRHPGME DEICPYATFH LLGFREEMDP TKAMNFQTFP 120
121 HQNGHAGPVP GHAGTMLPPG HPGHVHSRSG SQSMPRANRY QRKNSQG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1832-1938] |
1 11 21 31 41 51
| | | | | |
1 GQSSIYTPAP EYDDPANCAE EDQYRRYTRV NSQGGSLYSG PGPEYDDPAN CAPEEDQYGS 60
61 QYGGPYGQPY DHYGSRGSMG RRSIGSARNP GNGSPEPPPP PPRNHDM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1939-2017] |
1 11 21 31 41 51
| | | | | |
1 SNSSFNDSKE SNEISEAECD RDHGPRGNYG AVKRSPQPKD QRTTEEMRKL IERNETGPKQ 60
61 LQLQQANGAG FTAYDTMAV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
