| Protein: | Dscam-PL |
| Organism: | Drosophila melanogaster |
| Length: | 2031 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PL.
| Description | E-value | Query Range |
Subject Range |
|
|
1502.0 | [0..1] | [2031..1] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVS
|
| Detection Method: |  |
| Confidence: | 78.69897 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [139-810] |
1 11 21 31 41 51
| | | | | |
1 QHYEEDIHKA FVIRGNSAIL KCDIPSFVAD FVNVISWHSD EKENFYPGTE YDGKYLVLPS 60
61 GELHIREVGP EDGYKSYQCR TKHRLTGETR LSATKGRLVI TEPVGSVAPK VDVKDRITWL 120
121 DKPMGQALSL LCPAQSYPMP VYRWYKFIEG TTRKQAVVLN DRVKQVSGTL IIKDAVVEDS 180
181 GKYLCVVNNS VGGESVETVL TVTAPLSAKI DPPTQTVDFG RPAVFTCQYT GNPIKTVSWM 240
241 KDGKAIGHSE PVLRIESVKK EDKGMYQCFV RNDQESAEAS AELKLGGRFD PPVIRQAFQE 300
301 ETMEPGPSVF LKCVAGGNPT PEISWELDGK KIANNDRYQV GQYVTVNGDV VSYLNITSVH 360
361 ANDGGLYKCI AKSKVGVAEH SAKLNVYGLP YIRQMEKKAI VAGETLIVTC PVAGYPIDSI 420
421 VWERDNRALP INRKQKVFPN GTLIIENVER NSDQATYTCV AKNQEGYSAR GSLEVQVMVL 480
481 PRIIPFAFEE GPAQVGQYLT LHCSVPGGDL PLNIDWTLDG QAISEDLGIT TSRVGRRGSV 540
541 LTIEAVEASH AGNFTCHARN LAGHQQFTTP LNVYVPPRWI LEPTDKAFAQ GSDAKVECKA 600
601 DGFPKPQVTW KKAVGDTPGE YKDLKKSDNI RVEEGTLHVD NIQKTNEGYY LCEAINGIGS 660
661 GLSAVIMISV QA
|
| Detection Method: | |
| Confidence: | 56.045757 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [811-909] |
1 11 21 31 41 51
| | | | | |
1 PPEFTEKLRN QTARRGEPAV LQCEAKGEKP IGILWNMNNM RLDPKNDNRY TIREEILSTG 60
61 VMSSLSIKRT ERSDSALFTC VATNAFGSDD ASINMIVQE
|
| Detection Method: | |
| Confidence: | 36.69897 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [910-1006] |
1 11 21 31 41 51
| | | | | |
1 VPEMPYALKV LDKSGRSVQL SWAQPYDGNS PLDRYIIEFK RSRASWSEID RVIVPGHTTE 60
61 AQVQKLSPAT TYNIRIVAEN AIGTSQSSEA VTIITAE
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1ueyA |
| Description: | Solution Structure of The First Fibronectin Type III Domain of Human KIAA0343 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1007-1102] |
1 11 21 31 41 51
| | | | | |
1 EAPSGKPQNI KVEPVNQTTM RVTWKPPPRT EWNGEILGYY VGYKLSNTNS SYVFETINFI 60
61 TEEGKEHNLE LQNLRVYTQY SVVIQAFNKI GAGPLS
|
| Detection Method: | |
| Confidence: | 9.09691 |
| Match: | 1va9A |
| Description: | Solution structure of the second FNIII domain of DSCAML1 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1103-1213] |
1 11 21 31 41 51
| | | | | |
1 EEEKQFTAEG TPSQPPSDTA CTTLTSQTIR VGWVSPPLES ANGVIKTYKV VYAPSDEWYD 60
61 ETKRHYKKTA SSDTVLHGLK KYTNYTMQVL ATTAGGDGVR SVPIHCQTEP D
|
| Detection Method: | |
| Confidence: | 21.522879 |
| Match: | 1qg3A |
| Description: | Integin beta-4 subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1214-1310] |
1 11 21 31 41 51
| | | | | |
1 VPEAPTDVKA LVMGNAAILV SWRPPAQPNG IITQYTVYSK AEGAETETKT QKVPHYQMSF 60
61 EATELEKNKP YEFWVTASTT IGEGQQSKSI VAMPSDQ
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 1wfnA |
| Description: | The fourth FN3 domain of human sidekick-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| pattern binding | 0.31156427047296 | bayes_pls_golite062009 |
|
Region A: Residues: [1311-1656] |
1 11 21 31 41 51
| | | | | |
1 VPAKIASFDD TFTATFKEDA KMPCLAVGAP QPEITWKIKG VEFSANDRMR VLPDGSLLIK 60
61 SVNRQDAGDY SCHAENSIAK DSITHKLIVL APPQSPHVTL SATTTDALTV KLKPHEGDTA 120
121 PLHGYTLHYK PEFGEWETSE VSVDSQKHNI EGLLCGSRYQ VYATGFNNIG AGEASDILNT 180
181 RTKGQKPKLP EKPRFIEVSS NSVSLHFKAW KDGGCPMSHF VVESKKRDQI EWNQISNNVK 240
241 PDNNYVVLDL EPATWYNLRI TAHNSAGFTV AEYDFATLTV TGGTIAPLDD GSGHGNVHTR 300
301 IRLPAWMPEW LDLNFMVPLI ATVVVVAVGI CVVCVALSRR RADDMR
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 1n26A |
| Description: | Interleukin-6 receptor alpha chain, N-teminal domain; Interleukin-6 receptor alpha chain, domains 2 and 3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1657-1854] |
1 11 21 31 41 51
| | | | | |
1 GGQKDVYYDV VYNQTMGPGA TLDKRRPDLR DELGYIAPPN RKLPPVPGSN YNTCDRIKRG 60
61 RGGLRSNHST WDPRRNPNLY EELKAPPVPM HGNHYGHAHG NAECHYRHPG MEDEICPYAT 120
121 FHLLGFREEM DPTKAMNFQT FPHQNGHAGP VPGHAGTMLP PGHPGHVHSR SGSQSMPRAN 180
181 RYQRKNSQGG QSSIYTPA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1855-2031] |
1 11 21 31 41 51
| | | | | |
1 PEYDDPANCA EEDQYRRYTR VNSQGGSLYS GPGPEYDDPA NCAPEEDQYG SQYGGPYGQP 60
61 YDHYGSRGSM GRRSIGSARN PGNGSPEPPP PPPRNHDMSN SSFNDSKESN EISEAECDRD 120
121 HGPRGNYGAV KRSPQPKDQR TTEEMRKLIE RNETGPKQLQ LQQANGAGFT AYDTMAV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
