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View Structure Prediction Details

Protein: Dscam-PS
Organism: Drosophila melanogaster
Length: 698 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PS.

Description E-value Query
Range
Subject
Range
Dscam-PQ - The gene Down syndrome cell adhesion molecule is referred to in FlyBase by the symbol Dmel\Dscam (CG...
605.0 [0..1] [698..1]

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Predicted Domain #1
Region A:
Residues: [1-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVAQY YDTDVNKAYV IRGNAAVLKC EIPSFVADFV SVVSWHTDQN 180
  181 EDFLPGSEYD GKYLVLPSGE LHIREVGPED GYKSYQCRTK HRLTGETRLS ATKGRLVITE 240
  241 PVGSVAPKVD TRDEFTFART RMGASKALIC PAQSYPMPFF RWYKFIEGTT RKQAVVLNDR 300
  301 VKQVSGTLII KDAVVEDSGK YLCVVNNSVG GESVETVLTV TAPLSAKIDP PTQTVDFGRP 360
  361 AVFTCQYTGN PIKTVSWMKD GKAIGHSEPV LRIESVKKED KGMYQCFVRN DQESAEASAE 420
  421 LKLGGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.30103
Match: 2v5sA
Description: No description for 2v5sA was found.

Predicted Domain #2
Region A:
Residues: [427-698]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDPPVIRQAF QEETMEPGPS VFLKCVAGGN PTPEISWELD GKKIANNDRY QVGQYVTVNG  60
   61 DVVSYLNITS VHANDGGLYK CIAKSKVGVA EHSAKLNVYG LPYIRQMEKK AIVAGETLIV 120
  121 TCPVAGYPID SIVWERDNRA LPINRKQKVF PNGTLIIENV ERNSDQATYT CVAKNQEGYS 180
  181 ARGSLEVQVM VLPQIVPFAY EDLINMGDSI DLFCQIQKGD RPIKVHWSFE RSAGDYGFDQ 240
  241 VQPQMRTNRI SEKTSMISIP SASPAHTGRI PV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 2nziA
Description: No description for 2nziA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle