| Protein: | Dscam-PBA |
| Organism: | Drosophila melanogaster |
| Length: | 2035 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PBA.
| Description | E-value | Query Range |
Subject Range |
|
|
1495.0 | [0..3] | [2035..3] |
|
Region A: Residues: [1-253] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVPQS YTVNVMDESI LRGNSAILKC HIPSFVADFI VVDSWVEDEE 180
181 RVIYPQEDIA ESDGKYLVLP SGELHIREVG PEDGYKSYQC RTKHRLTGET RLSATKGRLV 240
241 ITEPVGSVAP KVD
|
| Detection Method: |  |
| Confidence: | 79.30103 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [254-913] |
1 11 21 31 41 51
| | | | | |
1 TRDEFTFART RMGASKALIC PAQSYPMPFF RWYKFIEGTT RKQAVVLNDR VKQVSGTLII 60
61 KDAVVEDSGK YLCVVNNSVG GESVETVLTV TAPLSAKIDP PTQTVDFGRP AVFTCQYTGN 120
121 PIKTVSWMKD GKAIGHSEPV LRIESVKKED KGMYQCFVRN DQESAEASAE LKLGGRFDPP 180
181 VIRQAFQEET MEPGPSVFLK CVAGGNPTPE ISWELDGKKI ANNDRYQVGQ YVTVNGDVVS 240
241 YLNITSVHAN DGGLYKCIAK SKVGVAEHSA KLNVYGLPYI RQMEKKAIVA GETLIVTCPV 300
301 AGYPIDSIVW ERDNRALPIN RKQKVFPNGT LIIENVERNS DQATYTCVAK NQEGYSARGS 360
361 LEVQVMVAPK IAPFDFGDEP SNFGESASVQ CLVTSGDFPV SFAWLFNGRE INENVYDVSM 420
421 VKLGKKISAL SIDIVRDHHA GNYTCVAVNR ATSVNFTAEL VVNVPPRWIL EPTDKAFAQG 480
481 SDAKVECKAD GFPKPQVTWK KAVGDTPGEY KDLKKSDNIR VEEGTLHVDN IQKTNEGYYL 540
541 CEAINGIGSG LSAVIMISVQ APPEFTEKLR NQTARRGEPA VLQCEAKGEK PIGILWNMNN 600
601 MRLDPKNDNR YTIREEILST GVMSSLSIKR TERSDSALFT CVATNAFGSD DASINMIVQE 660
661
|
| Detection Method: | |
| Confidence: | 58.69897 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [914-1008] |
1 11 21 31 41 51
| | | | | |
1 VPEMPYALKV LDKSGRSVQL SWAQPYDGNS PLDRYIIEFK RSRASWSEID RVIVPGHTTE 60
61 AQVQKLSPAT TYNIRIVAEN AIGTSQSSEA VTIIT
|
| Detection Method: | |
| Confidence: | 34.522879 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [1009-1542] |
1 11 21 31 41 51
| | | | | |
1 AEEAPSGKPQ NIKVEPVNQT TMRVTWKPPP RTEWNGEILG YYVGYKLSNT NSSYVFETIN 60
61 FITEEGKEHN LELQNLRVYT QYSVVIQAFN KIGAGPLSEE EKQFTAEGTP SQPPSDTACT 120
121 TLTSQTIRVG WVSPPLESAN GVIKTYKVVY APSDEWYDET KRHYKKTASS DTVLHGLKKY 180
181 TNYTMQVLAT TAGGDGVRSV PIHCQTEPDV PEAPTDVKAL VMGNAAILVS WRPPAQPNGI 240
241 ITQYTVYSKA EGAETETKTQ KVPHYQMSFE ATELEKNKPY EFWVTASTTI GEGQQSKSIV 300
301 AMPSDQVPAK IASFDDTFTA TFKEDAKMPC LAVGAPQPEI TWKIKGVEFS ANDRMRVLPD 360
361 GSLLIKSVNR QDAGDYSCHA ENSIAKDSIT HKLIVLAPPQ SPHVTLSATT TDALTVKLKP 420
421 HEGDTAPLHG YTLHYKPEFG EWETSEVSVD SQKHNIEGLL CGSRYQVYAT GFNNIGAGEA 480
481 SDILNTRTKG QKPKLPEKPR FIEVSSNSVS LHFKAWKDGG CPMSHFVVES KKRD
|
| Detection Method: | |
| Confidence: | 25.522879 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1543-1675] |
1 11 21 31 41 51
| | | | | |
1 QIEWNQISNN VKPDNNYVVL DLEPATWYNL RITAHNSAGF TVAEYDFATL TVTGGTIAPL 60
61 DDGSGHGNVH TRIRLPAWMP EWLDLNFMVP LIATVVVVAV GICVVCVALS RRRADDMRGG 120
121 QKDVYYDVVY NQT
|
| Detection Method: | |
| Confidence: | 14.0 |
| Match: | 1mfnA |
| Description: | SOLUTION NMR STRUCTURE OF LINKED CELL ATTACHMENT MODULES OF MOUSE FIBRONECTIN CONTAINING THE RGD AND SYNERGY REGIONS, 20 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1676-1849] |
1 11 21 31 41 51
| | | | | |
1 MGPGATLDKR RPDLRDELGY IAPPNRKLPP VPGSNYNTCD RIKRGRGGLR SNHSTWDPRR 60
61 NPNLYEELKA PPVPMHGNHY GHAHGNAECH YRHPGMEDEI CPYATFHLLG FREEMDPTKA 120
121 MNFQTFPHQN GHAGPVPGHA GTMLPPGHPG HVHSRSGSQS MPRANRYQRK NSQG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1850-2035] |
1 11 21 31 41 51
| | | | | |
1 GQSSIYTPAP EYDDPANCAE EDQYRRYTRV NSQGGSLYSG PGPEYDDPAN CAPEEDQYGS 60
61 QYGGPYGQPY DHYGSRGSMG RRSIGSARNP GNGSPEPPPP PPRNHDMSNS SFNDSKESNE 120
121 ISEAECDRDH GPRGNYGAVK RSPQPKDQRT TEEMRKLIER NETGPKQLQL QQANGAGFTA 180
181 YDTMAV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
