| Protein: | Dscam-PBF |
| Organism: | Drosophila melanogaster |
| Length: | 2031 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PBF.
| Description | E-value | Query Range |
Subject Range |
|
|
1526.0 | [0..3] | [2031..3] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV
|
| Detection Method: |  |
| Confidence: | 80.154902 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [111-252] |
1 11 21 31 41 51
| | | | | |
1 HAQVYACLAR NQFGSIISRD VHVRAVVAQY YEADVNKEHV IRGNSAVIKC LIPSFVADFV 60
61 EVVSWHTDEE ENYFPGAEYD GKYLVLPSGE LHIREVGPED GYKSYQCRTK HRLTGETRLS 120
121 ATKGRLVITE PVGSVKPKIN VQ
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 2oz4A |
| Description: | No description for 2oz4A was found. |
|
Region A: Residues: [253-898] |
1 11 21 31 41 51
| | | | | |
1 DKLQTREISQ GIGIALLCPA QSYPIPAHRW YKFIEGTTRK QAVVLNDRVK QVSGTLIIKD 60
61 AVVEDSGKYL CVVNNSVGGE SVETVLTVTA PLSAKIDPPT QTVDFGRPAV FTCQYTGNPI 120
121 KTVSWMKDGK AIGHSEPVLR IESVKKEDKG MYQCFVRNDQ ESAEASAELK LGGRFDPPVI 180
181 RQAFQEETME PGPSVFLKCV AGGNPTPEIS WELDGKKIAN NDRYQVGQYV TVNGDVVSYL 240
241 NITSVHANDG GLYKCIAKSK VGVAEHSAKL NVYGLPYIRQ MEKKAIVAGE TLIVTCPVAG 300
301 YPIDSIVWER DNRALPINRK QKVFPNGTLI IENVERNSDQ ATYTCVAKNQ EGYSARGSLE 360
361 VQVMVLPQVV PFDFGEESIN ELDMVSASCT VNKGDLPVDI YWTKNGGRVY TNDGLIVTRN 420
421 SQRLSVLSIE SVRARHAGNY SCVATNNAGA ITQSAMLAVN VPPRWILEPT DKAFAQGSDA 480
481 KVECKADGFP KPQVTWKKAV GDTPGEYKDL KKSDNIRVEE GTLHVDNIQK TNEGYYLCEA 540
541 INGIGSGLSA VIMISVQAPP EFTEKLRNQT ARRGEPAVLQ CEAKGEKPIG ILWNMNNMRL 600
601 DPKNDNRYTI REEILSTGVM SSLSIKRTER SDSALFTCVA TNAFGS
|
| Detection Method: | |
| Confidence: | 59.30103 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [899-997] |
1 11 21 31 41 51
| | | | | |
1 DDASINMIVQ EVPEMPYALK VLDKSGRSVQ LSWAQPYDGN SPLDRYIIEF KRSRASWSEI 60
61 DRVIVPGHTT EAQVQKLSPA TTYNIRIVAE NAIGTSQSS
|
| Detection Method: | |
| Confidence: | 35.045757 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [998-1110] |
1 11 21 31 41 51
| | | | | |
1 EAVTIITAEE APSGKPQNIK VEPVNQTTMR VTWKPPPRTE WNGEILGYYV GYKLSNTNSS 60
61 YVFETINFIT EEGKEHNLEL QNLRVYTQYS VVIQAFNKIG AGPLSEEEKQ FTA
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 2edyA |
| Description: | No description for 2edyA was found. |
|
Region A: Residues: [1111-1214] |
1 11 21 31 41 51
| | | | | |
1 EGTPSQPPSD TACTTLTSQT IRVGWVSPPL ESANGVIKTY KVVYAPSDEW YDETKRHYKK 60
61 TASSDTVLHG LKKYTNYTMQ VLATTAGGDG VRSVPIHCQT EPDV
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 2edxA |
| Description: | No description for 2edxA was found. |
|
Region A: Residues: [1215-1603] |
1 11 21 31 41 51
| | | | | |
1 PEAPTDVKAL VMGNAAILVS WRPPAQPNGI ITQYTVYSKA EGAETETKTQ KVPHYQMSFE 60
61 ATELEKNKPY EFWVTASTTI GEGQQSKSIV AMPSDQVPAK IASFDDTFTA TFKEDAKMPC 120
121 LAVGAPQPEI TWKIKGVEFS ANDRMRVLPD GSLLIKSVNR QDAGDYSCHA ENSIAKDSIT 180
181 HKLIVLAPPQ SPHVTLSATT TDALTVKLKP HEGDTAPLHG YTLHYKPEFG EWETSEVSVD 240
241 SQKHNIEGLL CGSRYQVYAT GFNNIGAGEA SDILNTRTKG QKPKLPEKPR FIEVSSNSVS 300
301 LHFKAWKDGG CPMSHFVVES KKRDQIEWNQ ISNNVKPDNN YVVLDLEPAT WYNLRITAHN 360
361 SAGFTVAEYD FATLTVTGGT IAPLDDGSG
|
| Detection Method: | |
| Confidence: | 24.522879 |
| Match: | 1fnfA |
| Description: | FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1604-1837] |
1 11 21 31 41 51
| | | | | |
1 HGNVHTRIRL PAWMPEWLDL NFMVPLIATV VVVAVGICVV CVALSRRRAD DMRGGQKDVY 60
61 YDVVYNQTMG PGATLDKRRP DLRDELGYIA PPNRKLPPVP GSNYNTCDRI KRGRGGLRSN 120
121 HSTWDPRRNP NLYEELKAPP VPMHGNHYGH AHGNAECHYR HPGMEDEICP YATFHLLGFR 180
181 EEMDPTKAMN FQTFPHQNGH AGPVPGHAGT MLPPGHPGHV HSRSGSQSMP RANR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1838-2031] |
1 11 21 31 41 51
| | | | | |
1 YQRKNSQGGQ SSIYTPAPEY DDPANCAEED QYRRYTRVNS QGGSLYSGPG PEYDDPANCA 60
61 PEEDQYGSQY GGPYGQPYDH YGSRGSMGRR SIGSARNPGN GSPEPPPPPP RNHDMSNSSF 120
121 NDSKESNEIS EAECDRDHGP RGNYGAVKRS PQPKDQRTTE EMRKLIERNE TGPKQLQLQQ 180
181 ANGAGFTAYD TMAV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
