| Protein: | Dscam-PBB |
| Organism: | Drosophila melanogaster |
| Length: | 2020 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PBB.
| Description | E-value | Query Range |
Subject Range |
|
|
1538.0 | [0..1] | [2020..1] |
|
Region A: Residues: [1-245] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVPQS YTVNVMDESI LRGNSAILKC HIPSFVADFI VVDSWVEDEE 180
181 RVIYPQEDIA ESDGKYLVLP SGELHIREVG PEDGYKSYQC RTKHRLTGET RLSATKGRLV 240
241 ITEPV
|
| Detection Method: |  |
| Confidence: | 76.69897 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [246-900] |
1 11 21 31 41 51
| | | | | |
1 GSVAPKVDVK DRITWLDKPM GQALSLLCPA QSYPMPVYRW YKFIEGTTRK QAVVLNDRVK 60
61 QVSGTLIIKD AVVEDSGKYL CVVNNSVGGE SVETVLTVTA PLSAKIDPPT QTVDFGRPAV 120
121 FTCQYTGNPI KTVSWMKDGK AIGHSEPVLR IESVKKEDKG MYQCFVRNDQ ESAEASAELK 180
181 LGGRFDPPVI RQAFQEETME PGPSVFLKCV AGGNPTPEIS WELDGKKIAN NDRYQVGQYV 240
241 TVNGDVVSYL NITSVHANDG GLYKCIAKSK VGVAEHSAKL NVYGLPYIRQ MEKKAIVAGE 300
301 TLIVTCPVAG YPIDSIVWER DNRALPINRK QKVFPNGTLI IENVERNSDQ ATYTCVAKNQ 360
361 EGYSARGSLE VQVMVPPQVL PFSFGESAAD VGDIASANCV VPKGDLPLEI RWSLNSAPIV 420
421 NGENGFTLVR LNKRTSLLNI DSLNAFHRGV YKCIATNPAG TSEYVAELQV NVPPRWILEP 480
481 TDKAFAQGSD AKVECKADGF PKPQVTWKKA VGDTPGEYKD LKKSDNIRVE EGTLHVDNIQ 540
541 KTNEGYYLCE AINGIGSGLS AVIMISVQAP PEFTEKLRNQ TARRGEPAVL QCEAKGEKPI 600
601 GILWNMNNMR LDPKNDNRYT IREEILSTGV MSSLSIKRTE RSDSALFTCV ATNAF
|
| Detection Method: | |
| Confidence: | 58.0 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [901-1013] |
1 11 21 31 41 51
| | | | | |
1 GSDDASINMI VQEVPEMPYA LKVLDKSGRS VQLSWAQPYD GNSPLDRYII EFKRSRASWS 60
61 EIDRVIVPGH TTEAQVQKLS PATTYNIRIV AENAIGTSQS SEAVTIITAE EAP
|
| Detection Method: | |
| Confidence: | 36.0 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [1014-1107] |
1 11 21 31 41 51
| | | | | |
1 SGKPQNIKVE PVNQTTMRVT WKPPPRTEWN GEILGYYVGY KLSNTNSSYV FETINFITEE 60
61 GKEHNLELQN LRVYTQYSVV IQAFNKIGAG PLSE
|
| Detection Method: | |
| Confidence: | 10.522879 |
| Match: | 2edxA |
| Description: | No description for 2edxA was found. |
|
Region A: Residues: [1108-1223] |
1 11 21 31 41 51
| | | | | |
1 EEKQFTAEGT PSQPPSDTAC TTLTSQTIRV GWVSPPLESA NGVIKTYKVV YAPSDEWYDE 60
61 TKRHYKKTAS SDTVLHGLKK YTNYTMQVLA TTAGGDGVRS VPIHCQTEPD VPEAPT
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 1qg3A |
| Description: | Integin beta-4 subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1224-1607] |
1 11 21 31 41 51
| | | | | |
1 DVKALVMGNA AILVSWRPPA QPNGIITQYT VYSKAEGAET ETKTQKVPHY QMSFEATELE 60
61 KNKPYEFWVT ASTTIGEGQQ SKSIVAMPSD QVPAKIASFD DTFTATFKED AKMPCLAVGA 120
121 PQPEITWKIK GVEFSANDRM RVLPDGSLLI KSVNRQDAGD YSCHAENSIA KDSITHKLIV 180
181 LAPPQSPHVT LSATTTDALT VKLKPHEGDT APLHGYTLHY KPEFGEWETS EVSVDSQKHN 240
241 IEGLLCGSRY QVYATGFNNI GAGEASDILN TRTKGQKPKL PEKPRFIEVS SNSVSLHFKA 300
301 WKDGGCPMSH FVVESKKRDQ IEWNQISNNV KPDNNYVVLD LEPATWYNLR ITAHNSAGFT 360
361 VAEYDFATLT VTGGTIAPSR DLPE
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 1fnfA |
| Description: | FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1608-1845] |
1 11 21 31 41 51
| | | | | |
1 LSAEDTIRII LSNLNLVVPV VAALLVIIIA IIVICILRSK GNHHKDDVVY NQTMGPGATL 60
61 DKRRPDLRDE LGYIAPPNRK LPPVPGSNYN TCDRIKRGRG GLRSNHSTWD PRRNPNLYEE 120
121 LKAPPVPMHG NHYGHAHGNA ECHYRHPGME DEICPYATFH LLGFREEMDP TKAMNFQTFP 180
181 HQNGHAGPVP GHAGTMLPPG HPGHVHSRSG SQSMPRANRY QRKNSQGGQS SIYTPAPE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1846-2020] |
1 11 21 31 41 51
| | | | | |
1 YDDPANCAEE DQYRRYTRVN SQGGSLYSGP GPEYDDPANC APEEDQYGSQ YGGPYGQPYD 60
61 HYGSRGSMGR RSIGSARNPG NGSPEPPPPP PRNHDMSNSS FNDSKESNEI SEAECDRDHG 120
121 PRGNYGAVKR SPQPKDQRTT EEMRKLIERN ETGPKQLQLQ QANGAGFTAY DTMAV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
