| Protein: | Dscam-PAL |
| Organism: | Drosophila melanogaster |
| Length: | 2016 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAL.
| Description | E-value | Query Range |
Subject Range |
|
|
1494.0 | [0..3] | [2016..3] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVNQF YE
|
| Detection Method: |  |
| Confidence: | 81.69897 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [143-809] |
1 11 21 31 41 51
| | | | | |
1 AEIMTEYVIR GNAAVLKCSI PSFVADFVRV ESWIDDEGNV LSFSDNYDGK YLVLPSGELH 60
61 IREVGPEDGY KSYQCRTKHR LTGETRLSAT KGRLVITEPV GSVAPKVDMH DKMDFTIRSS 120
121 NRSLNLFCKA QGFPMPAFRW YKFIEGTTRK QAVVLNDRVK QVSGTLIIKD AVVEDSGKYL 180
181 CVVNNSVGGE SVETVLTVTA PLSAKIDPPT QTVDFGRPAV FTCQYTGNPI KTVSWMKDGK 240
241 AIGHSEPVLR IESVKKEDKG MYQCFVRNDQ ESAEASAELK LGGRFDPPVI RQAFQEETME 300
301 PGPSVFLKCV AGGNPTPEIS WELDGKKIAN NDRYQVGQYV TVNGDVVSYL NITSVHANDG 360
361 GLYKCIAKSK VGVAEHSAKL NVYGLPYIRQ MEKKAIVAGE TLIVTCPVAG YPIDSIVWER 420
421 DNRALPINRK QKVFPNGTLI IENVERNSDQ ATYTCVAKNQ EGYSARGSLE VQVMVPPKIT 480
481 PFDFGDEPTN VEDSVSVTCL ISSGDLPIDI EWFFNDYGIS SYSGVTVVKG GKRSSVLGID 540
541 NVQARHAGKY SCRAKNRAAA VNYTFDLVVN VPPRWILEPT DKAFAQGSDA KVECKADGFP 600
601 KPQVTWKKAV GDTPGEYKDL KKSDNIRVEE GTLHVDNIQK TNEGYYLCEA INGIGSGLSA 660
661 VIMISVQ
|
| Detection Method: | |
| Confidence: | 57.0 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [810-912] |
1 11 21 31 41 51
| | | | | |
1 APPEFTEKLR NQTARRGEPA VLQCEAKGEK PIGILWNMNN MRLDPKNDNR YTIREEILST 60
61 GVMSSLSIKR TERSDSALFT CVATNAFGSD DASINMIVQE VPE
|
| Detection Method: | |
| Confidence: | 25.30103 |
| Match: | 2ec8A |
| Description: | No description for 2ec8A was found. |
|
Region A: Residues: [913-1110] |
1 11 21 31 41 51
| | | | | |
1 MPYALKVLDK SGRSVQLSWA QPYDGNSPLD RYIIEFKRSR ASWSEIDRVI VPGHTTEAQV 60
61 QKLSPATTYN IRIVAENAIG TSQSSEAVTI ITAEEAPSGK PQNIKVEPVN QTTMRVTWKP 120
121 PPRTEWNGEI LGYYVGYKLS NTNSSYVFET INFITEEGKE HNLELQNLRV YTQYSVVIQA 180
181 FNKIGAGPLS EEEKQFTA
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 1cfbA |
| Description: | CRYSTAL STRUCTURE OF TANDEM TYPE III FIBRONECTIN DOMAINS FROM DROSOPHILA NEUROGLIAN AT 2.0 ANGSTROMS |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1111-1652] |
1 11 21 31 41 51
| | | | | |
1 EGTPSQPPSD TACTTLTSQT IRVGWVSPPL ESANGVIKTY KVVYAPSDEW YDETKRHYKK 60
61 TASSDTVLHG LKKYTNYTMQ VLATTAGGDG VRSVPIHCQT EPDVPEAPTD VKALVMGNAA 120
121 ILVSWRPPAQ PNGIITQYTV YSKAEGAETE TKTQKVPHYQ MSFEATELEK NKPYEFWVTA 180
181 STTIGEGQQS KSIVAMPSDQ VPAKIASFDD TFTATFKEDA KMPCLAVGAP QPEITWKIKG 240
241 VEFSANDRMR VLPDGSLLIK SVNRQDAGDY SCHAENSIAK DSITHKLIVL APPQSPHVTL 300
301 SATTTDALTV KLKPHEGDTA PLHGYTLHYK PEFGEWETSE VSVDSQKHNI EGLLCGSRYQ 360
361 VYATGFNNIG AGEASDILNT RTKGQKPKLP EKPRFIEVSS NSVSLHFKAW KDGGCPMSHF 420
421 VVESKKRDQI EWNQISNNVK PDNNYVVLDL EPATWYNLRI TAHNSAGFTV AEYDFATLTV 480
481 TGGTIAPSRD LPELSAEDTI RIILSNLNLV VPVVAALLVI IIAIIVICIL RSKGNHHKDD 540
541 VV
|
| Detection Method: | |
| Confidence: | 26.154902 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1653-1834] |
1 11 21 31 41 51
| | | | | |
1 YNQTMGPGAT LDKRRPDLRD ELGYIAPPNR KLPPVPGSNY NTCDRIKRGR GGLRSNHSTW 60
61 DPRRNPNLYE ELKAPPVPMH GNHYGHAHGN AECHYRHPGM EDEICPYATF HLLGFREEMD 120
121 PTKAMNFQTF PHQNGHAGPV PGHAGTMLPP GHPGHVHSRS GSQSMPRANR YQRKNSQGGQ 180
181 SS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1835-2016] |
1 11 21 31 41 51
| | | | | |
1 IYTPAPEYDD PANCAEEDQY RRYTRVNSQG GSLYSGPGPE YDDPANCAPE EDQYGSQYGG 60
61 PYGQPYDHYG SRGSMGRRSI GSARNPGNGS PEPPPPPPRN HDMSNSSFND SKESNEISEA 120
121 ECDRDHGPRG NYGAVKRSPQ PKDQRTTEEM RKLIERNETG PKQLQLQQAN GAGFTAYDTM 180
181 AV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
