| Protein: | Dscam-PBH |
| Organism: | Drosophila melanogaster |
| Length: | 2035 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PBH.
| Description | E-value | Query Range |
Subject Range |
|
|
1539.0 | [0..3] | [2035..3] |
|
Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVV
|
| Detection Method: |  |
| Confidence: | 78.69897 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [138-243] |
1 11 21 31 41 51
| | | | | |
1 PQSYTVNVMD ESILRGNSAI LKCHIPSFVA DFIVVDSWVE DEERVIYPQE DIAESDGKYL 60
61 VLPSGELHIR EVGPEDGYKS YQCRTKHRLT GETRLSATKG RLVITE
|
| Detection Method: | |
| Confidence: | 6.39794 |
| Match: | 1zvoC |
| Description: | Semi-extended solution structure of human myeloma immunoglobulin D determined by constrained X-ray scattering |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [244-902] |
1 11 21 31 41 51
| | | | | |
1 PIGSVAPRVN RKDEFNHDRI KSSKTISIQC PAQAFPVPVY RWYKFIEGTT RKQAVVLNDR 60
61 VKQVSGTLII KDAVVEDSGK YLCVVNNSVG GESVETVLTV TAPLSAKIDP PTQTVDFGRP 120
121 AVFTCQYTGN PIKTVSWMKD GKAIGHSEPV LRIESVKKED KGMYQCFVRN DQESAEASAE 180
181 LKLGGRFDPP VIRQAFQEET MEPGPSVFLK CVAGGNPTPE ISWELDGKKI ANNDRYQVGQ 240
241 YVTVNGDVVS YLNITSVHAN DGGLYKCIAK SKVGVAEHSA KLNVYGLPYI RQMEKKAIVA 300
301 GETLIVTCPV AGYPIDSIVW ERDNRALPIN RKQKVFPNGT LIIENVERNS DQATYTCVAK 360
361 NQEGYSARGS LEVQVMVPPH VLPFSFGSEV FNMGDVLSIT CVVLKGDLPL RIHWTLNGEP 420
421 VATGVNGFTV MQLNQRTTYL SVDALEAKHR GSYSCVAQNQ AGEAIYSADL QVNVPPRWIL 480
481 EPTDKAFAQG SDAKVECKAD GFPKPQVTWK KAVGDTPGEY KDLKKSDNIR VEEGTLHVDN 540
541 IQKTNEGYYL CEAINGIGSG LSAVIMISVQ APPEFTEKLR NQTARRGEPA VLQCEAKGEK 600
601 PIGILWNMNN MRLDPKNDNR YTIREEILST GVMSSLSIKR TERSDSALFT CVATNAFGS
|
| Detection Method: | |
| Confidence: | 61.39794 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [903-1001] |
1 11 21 31 41 51
| | | | | |
1 DDASINMIVQ EVPEMPYALK VLDKSGRSVQ LSWAQPYDGN SPLDRYIIEF KRSRASWSEI 60
61 DRVIVPGHTT EAQVQKLSPA TTYNIRIVAE NAIGTSQSS
|
| Detection Method: | |
| Confidence: | 35.39794 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [1002-1120] |
1 11 21 31 41 51
| | | | | |
1 EAVTIITAEE APSGKPQNIK VEPVNQTTMR VTWKPPPRTE WNGEILGYYV GYKLSNTNSS 60
61 YVFETINFIT EEGKEHNLEL QNLRVYTQYS VVIQAFNKIG AGPLSEEEKQ FTAEGTPSQ
|
| Detection Method: | |
| Confidence: | 11.045757 |
| Match: | 2edxA |
| Description: | No description for 2edxA was found. |
|
Region A: Residues: [1121-1217] |
1 11 21 31 41 51
| | | | | |
1 PPSDTACTTL TSQTIRVGWV SPPLESANGV IKTYKVVYAP SDEWYDETKR HYKKTASSDT 60
61 VLHGLKKYTN YTMQVLATTA GGDGVRSVPI HCQTEPD
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 1qg3A |
| Description: | Integin beta-4 subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1218-1619] |
1 11 21 31 41 51
| | | | | |
1 VPEAPTDVKA LVMGNAAILV SWRPPAQPNG IITQYTVYSK AEGAETETKT QKVPHYQMSF 60
61 EATELEKNKP YEFWVTASTT IGEGQQSKSI VAMPSDQVPA KIASFDDTFT ATFKEDAKMP 120
121 CLAVGAPQPE ITWKIKGVEF SANDRMRVLP DGSLLIKSVN RQDAGDYSCH AENSIAKDSI 180
181 THKLIVLAPP QSPHVTLSAT TTDALTVKLK PHEGDTAPLH GYTLHYKPEF GEWETSEVSV 240
241 DSQKHNIEGL LCGSRYQVYA TGFNNIGAGE ASDILNTRTK GQKPKLPEKP RFIEVSSNSV 300
301 SLHFKAWKDG GCPMSHFVVE SKKRDQIEWN QISNNVKPDN NYVVLDLEPA TWYNLRITAH 360
361 NSAGFTVAEY DFATLTVTGG TIAPLDDGSG HGNVHTRIRL PA
|
| Detection Method: | |
| Confidence: | 23.69897 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1620-1863] |
1 11 21 31 41 51
| | | | | |
1 WMPEWLDLNF MVPLIATVVV VAVGICVVCV ALSRRRADDM RGGQKDVYYD VVYNQTMGPG 60
61 ATLDKRRPDL RDELGYIAPP NRKLPPVPGS NYNTCDRIKR GRGGLRSNHS TWDPRRNPNL 120
121 YEELKAPPVP MHGNHYGHAH GNAECHYRHP GMEDEICPYA TFHLLGFREE MDPTKAMNFQ 180
181 TFPHQNGHAG PVPGHAGTML PPGHPGHVHS RSGSQSMPRA NRYQRKNSQG GQSSIYTPAP 240
241 EYDD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1864-2035] |
1 11 21 31 41 51
| | | | | |
1 PANCAEEDQY RRYTRVNSQG GSLYSGPGPE YDDPANCAPE EDQYGSQYGG PYGQPYDHYG 60
61 SRGSMGRRSI GSARNPGNGS PEPPPPPPRN HDMSNSSFND SKESNEISEA ECDRDHGPRG 120
121 NYGAVKRSPQ PKDQRTTEEM RKLIERNETG PKQLQLQQAN GAGFTAYDTM AV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
