YRC Public Data Repository - Protein Structure Prediction

Protein:	AGRP_MOUSE
Organism:	Mus musculus
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGRP_MOUSE.

Description	E-value	Query Range	Subject Range
AGRP_PIG - Agouti-related protein OS=Sus scrofa GN=AGRP PE=3 SV=2	206.0	[0..1]	[131..1]
AGRP_BOVIN - Agouti-related protein OS=Bos taurus GN=AGRP PE=2 SV=1	202.0	[0..1]	[131..1]
gi\|73957497 - gi\|73957497\|ref\|XP_853932.1\| PREDICTED: similar to Agouti-related protein precursor [Canis familiari...	187.0	[0..16]	[131..16]
AGRP - agouti related protein homolog (mouse) gi\|114663139 - gi\|114663139\|ref\|XP_001164015.1\| PREDICTED: similar to Agouti related protein [Pan troglodytes]	183.0	[0..1]	[131..1]
gi\|62665164, gi\|... - gi\|62665164\|ref\|XP_574228.1\| PREDICTED: similar to Agouti-related protein precursor [Rattus norvegic...	182.0	[0..1]	[130..1]
gi\|109128902 - gi\|109128902\|ref\|XP_001091740.1\| PREDICTED: similar to Agouti-related protein precursor [Macaca mula...	179.0	[0..18]	[131..18]
gi\|48256953 - gi\|48256953\|gb\|AAT41659.1\| agouti-related peptide [Ovis aries]	158.0	[0..24]	[125..1]
gi\|36788207 - gi\|36788207\|emb\|CAD88211.1\| agouti-related protein precursor [Carassius auratus]	145.0	[0..23]	[121..18]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTAMLLSCV LLLALPPTLG VQMGVAPLKG IRRPDQALFP EFPGLSLNGL KKTTADRAEE  60
   61 VLLQKAEALA EVLDPQNRES RSPRRCVRLH ESCLGQQVPC CDPCATCYCR FFNAFCYCRK 120
  121 LGTATNLCSR T

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.79588
Match:	PF05039.3
Description:	No description for PF05039.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits