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View Structure Prediction Details

Protein: HXC5_MOUSE
Organism: Mus musculus
Length: 222 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HXC5_MOUSE.

Description E-value Query
Range
Subject
Range
gi|73996360 - gi|73996360|ref|XP_849475.1| PREDICTED: similar to homeo box C5 [Canis familiaris]
153.0 [0..1] [222..1]
HGNC:5127|MIM:14... - C5
gi|146327466, gi... - gi|208966502|dbj|BAG73265.1| homeobox C5 [synthetic construct], gi|147897703|gb|AAI40273.1| Homeobox...
HOXC5 - homeobox C5
153.0 [0..1] [222..1]
HXC5_MOUSE - (P32043) Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2)
152.0 [0..1] [222..1]
gi|4322076 - gi|4322076|gb|AAD15947.1| homeobox protein [Danio rerio]
151.0 [0..1] [220..1]
gi|109483025 - gi|109483025|ref|XP_001068679.1| PREDICTED: similar to homeobox C5 [Rattus norvegicus]
150.0 [0..1] [220..1]
gi|154425967, gi... - gi|76609634|ref|XP_590969.2| PREDICTED: similar to Homeobox D4 [Bos taurus], gi|155371905|ref|NP_001...
148.0 [0..1] [218..3]
gi|116294310 - gi|116294310|gb|AAP79287.2| hox 7 [Saccoglossus kowalevskii]
146.0 [0..1] [220..1]
HXD4_PANPA - Homeobox protein Hox-D4 OS=Pan paniscus GN=HOXD4 PE=3 SV=1
HXD4_PANTR - Homeobox protein Hox-D4 OS=Pan troglodytes GN=HOXD4 PE=3 SV=1
146.0 [0..1] [218..3]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYVANSFY KQSPNIPAYN MQTCGNYGSA SEVQASRYCY GGLDLSITFP PPAPSNSLHG  60
   61 VDMAANPRAH PDRPACSAAA APGHALGRDE AAPLNPGMYS QKAARPALEE RAKSSGEIKE 120
  121 EQAQTGQPAG LSQPPAPPQI YPWMTKLHMS HETD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKRSRTSYTR YQTLELEKEF HFNRYLTRRR RIEIANNLCL NERQIKIWFQ NRRMKWKKDS  60
   61 KMKSKEAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.221849
Match: 1homA
Description: DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle