YRC Public Data Repository - Protein Structure Prediction

Protein:	PNOC_MOUSE
Organism:	Mus musculus
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNOC_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|219519230, gi... - gi\|219519230\|gb\|AAI44866.1\| Pnoc protein [Mus musculus], gi\|148704077\|gb\|EDL36024.1\| prepronocicepti...	238.0	[0..1]	[185..1]
gi\|109085998 - gi\|109085998\|ref\|XP_001110309.1\| PREDICTED: prepronociceptin [Macaca mulatta]	232.0	[0..1]	[187..1]
gi\|1583868 - gi\|1583868\|prf\|\|2121439A dynorphin-like peptide gi\|1172239 - gi\|1172239\|gb\|AAB35376.1\| ORL1 receptor agonist precursor [Rattus sp.]	227.0	[0..14]	[187..1]
gi\|61357478 - gi\|61357478\|gb\|AAX41393.1\| prepronociceptin [synthetic construct]	226.0	[0..22]	[187..22]
PNOC - prepronociceptin gi\|60822651, gi\|... - gi\|61357471\|gb\|AAX41392.1\| prepronociceptin [synthetic construct], gi\|60822651\|gb\|AAX36616.1\| prepro... ENSPTRT00000037261 - null	225.0	[0..22]	[187..22]
gi\|114619491 - gi\|114619491\|ref\|XP_519684.2\| PREDICTED: similar to pre-pro-orphanin FQ [Pan troglodytes]	224.0	[0..22]	[185..22]
PNOC_RAT - Prepronociceptin OS=Rattus norvegicus GN=Pnoc PE=1 SV=1	224.0	[0..1]	[187..1]
gi\|73993903 - gi\|73993903\|ref\|XP_543221.2\| PREDICTED: similar to Nociceptin precursor [Canis familiaris]	220.0	[0..21]	[187..21]
PNOC_BOVIN - Prepronociceptin OS=Bos taurus GN=PNOC PE=2 SV=1	213.0	[0..22]	[186..22]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILFCDVLL LSLLSSVFSS CPRDCLTCQE KLHPAPDSFN LKTCILQCEE KVFPR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.60206
Match:	PF01160.9
Description:	No description for PF01160.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [56-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLWTVCTKVM ASGSGQLSPA DPELVSAALY QPKASEMQHL KRMPRVRSLV QVRDAEPGAD  60
   61 AEPGADAEPG ADDAEEVEQK QLQKRFGGFT GARKSARKLA NQKRFSEFMR QYLVLSMQSS 120
  121 QRRRTLHQNG NV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits