YRC Public Data Repository - Protein Structure Prediction

Protein:	TM2D3_MOUSE
Organism:	Mus musculus
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TM2D3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157820247, gi... - gi\|157820247\|ref\|NP_001099737.1\| TM2 domain containing 3 [Rattus norvegicus], gi\|149057087\|gb\|EDM084...	403.0	[0..1]	[261..1]
TM2D3 - TM2 domain containing 3	368.0	[0..1]	[261..1]
gi\|114659227 - gi\|114659227\|ref\|XP_001143945.1\| PREDICTED: similar to TM2 domain containing 3 isoform 4 [Pan troglo...	366.0	[0..1]	[261..1]
gi\|109082559 - gi\|109082559\|ref\|XP_001086067.1\| PREDICTED: similar to BBP-like protein 2 isoform 2 isoform 3 [Macac...	365.0	[0..1]	[261..1]
gi\|73951178 - gi\|73951178\|ref\|XP_536173.2\| PREDICTED: similar to BBP-like protein 2 isoform a [Canis familiaris]	361.0	[0..1]	[261..1]
gi\|21312084, gi\|... - gi\|21312084\|ref\|NP_081071.1\| TM2 domain containing 3 isoform 1 [Mus musculus], gi\|19354318\|gb\|AAH246...	348.0	[0..1]	[261..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAAEPLRS VRHLSRVLLF LSQCYILSGD GSLNLEHSQP LAQAIKDPGP TRTFSVVPRA  60
   61 AENQLFSHLT ESTEIPPYMT KCPSNGLCSR LPADCIECAT NVSCTYGKPV TFDCTVKPSV 120
  121 TCVDQDLKPQ RNFVINMTCR FCWQLPETDY ECSNSTTCMT VACPRQRYFA NCTVRDHIHC 180
  181 LG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.975
Match:	1gwsA
Description:	16-heme cytochrome c HmcA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [183-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRTFPKLLYC NWTGGYKWST ALALSITLGG FGADRFYLGQ WREGLGKLFS FGGLGIWTLI  60
   61 DVLLIGVGYV GPADGSLYI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits