YRC Public Data Repository - Protein Structure Prediction

Protein:	TCL1A_MOUSE
Organism:	Mus musculus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCL1A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|16974832, gi\|... - gi\|16974832\|pdb\|1JNP\|B Chain B, Crystal Structure Of Murine Tcl1 At 2.5 Resolution, gi\|16974831\|pdb\|...	181.0	[0..1]	[116..1]
gi\|109479917, gi... - gi\|157819357\|ref\|NP_001103071.1\| T-cell leukemia/lymphoma 1A [Rattus norvegicus], gi\|149025451\|gb\|ED...	165.0	[0..1]	[112..1]
gi\|76682377 - gi\|76682377\|ref\|XP_583000.2\| PREDICTED: similar to T-cell lymphoma-1, partial [Bos taurus]	152.0	[0..1]	[107..60]
gi\|157829644, gi... - gi\|3212251\|pdb\|1A1X\| Chain , Crystal Structure Of Mtcp-1 Involved In T Cell Malignancies, gi\|15782...	151.0	[0..6]	[109..2]
gi\|74009211 - gi\|74009211\|ref\|XP_549385.2\| PREDICTED: similar to P13 MTCP-1 protein (Mature T-cell proliferation-1...	149.0	[0..7]	[109..2]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQRAHRAE TPAHPNRLWI WEKHVYLDEF RRSWLPVVIK SNEKFQVILR QEDVTLGEAM  60
   61 SPSQLVPYEL PLMWQLYPKD RYRSCDSMYW QILYHIKFRD VEDMLLELID SESNDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	1jnpA
Description:	p14-TCL1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.10215477176861	bayes_pls_golite062009
protein binding	0.769979871341236	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: