YRC Public Data Repository - Protein Structure Prediction

Protein:	CD9_MOUSE
Organism:	Mus musculus
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CD9_MOUSE.

Description	E-value	Query Range	Subject Range
CD9_BOVIN - CD9 antigen OS=Bos taurus GN=CD9 PE=2 SV=2	223.0	[0..1]	[226..1]
CD9_RAT - CD9 antigen OS=Rattus norvegicus GN=Cd9 PE=1 SV=2	222.0	[0..1]	[226..1]
gi\|21914408 - gi\|21914408\|gb\|AAM81376.1\|AF525029_1 transmembrane protein CD9 [Sus scrofa]	221.0	[0..1]	[226..1]
CD9_FELCA - CD9 antigen OS=Felis catus GN=CD9 PE=2 SV=2	210.0	[0..1]	[226..1]
gi\|109095183, gi... - gi\|109095183\|ref\|XP_001102751.1\| PREDICTED: CD9 molecule isoform 2 [Macaca mulatta], gi\|109095181\|re...	207.0	[0..1]	[226..1]
CD9_CHLAE - CD9 antigen OS=Chlorocebus aethiops GN=CD9 PE=2 SV=2	206.0	[0..1]	[226..1]
gi\|123995645, gi... - gi\|123995645\|gb\|ABM85424.1\| CD9 molecule [synthetic construct], gi\|123980822\|gb\|ABM82240.1\| CD9 mole... CD9 - CD9 molecule	206.0	[0..1]	[226..1]
gi\|54696558, gi\|... - gi\|61366160\|gb\|AAX42822.1\| CD9 antigen [synthetic construct], gi\|54696558\|gb\|AAV38651.1\| CD9 antigen...	206.0	[0..1]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKGGSKCI KYLLFGFNFI FWLAGIAVLA IGLWLRFDSQ TKSIFEQENN HSSFYTGVYI  60
   61 LIGAGALMML VGFLGCCGAV QESQCMLGLF FGFLLVIFAI EIAA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	1oedC
Description:	Acetylcholine receptor protein, delta chain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [105-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVWGYTHKDE VIKELQEFYK DTYQKLRSKD EPQRETLKAI HMALDCCGIA GPLEQFISDT  60
   61 CPKKQLLESF QVKPCPEAIS EVFNNKFHII GAVGIGIAVV MIFGMIFSMI LCCAIRRSRE 120
  121 MV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.522879
Match:	1g8qA
Description:	CD81 extracellular domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	1.71804056581958	bayes_pls_golite062009
binding	1.62531598262239	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: