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View Structure Prediction Details

Protein: CD53_MOUSE
Organism: Mus musculus
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CD53_MOUSE.

Description E-value Query
Range		 Subject
Range
CD9_BOVIN - CD9 antigen OS=Bos taurus GN=CD9 PE=2 SV=2
 199.0 [0..2] [217..3]
CD9_MOUSE - CD9 antigen OS=Mus musculus GN=Cd9 PE=1 SV=2
 194.0 [0..2] [217..3]
gi|21914408 - gi|21914408|gb|AAM81376.1|AF525029_1 transmembrane protein CD9 [Sus scrofa]
 193.0 [0..2] [217..3]
CD9_RAT - CD9 antigen OS=Rattus norvegicus GN=Cd9 PE=1 SV=2
 189.0 [0..2] [217..3]
gi|50752761 - gi|50752761|ref|XP_413732.1| PREDICTED: similar to RIKEN cDNA C230081A13 [Gallus gallus]
 184.0 [0..1] [215..2258]
CD9_FELCA - CD9 antigen OS=Felis catus GN=CD9 PE=2 SV=2
 184.0 [0..2] [217..3]
gi|68357850 - gi|68357850|ref|XP_684965.1| PREDICTED: similar to MGC80611 protein [Danio rerio]
 183.0 [0..3] [217..1071]
gi|109095183, gi... - gi|109095183|ref|XP_001102751.1| PREDICTED: CD9 molecule isoform 2 [Macaca mulatta], gi|109095181|re...
 182.0 [0..2] [217..3]
gi|114643018, gi... - gi|114643022|ref|XP_508947.2| PREDICTED: CD9 antigen isoform 5 [Pan troglodytes], gi|114643020|ref|X...
 181.0 [0..2] [217..3]

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Predicted Domain #1
Region A:
Residues: [1-92] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMSSLKLLK YVLFIFNLLF WVCGCCILGF GIYFLVQNTY GVLFRNLPFL TLGNILVIVG  60
   61 SIIMVVAFLG CMGSIKENKC LLMSFFVLLL II

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.17
Match: 1oedC
Description: Acetylcholine receptor protein, delta chain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [93-219] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLAEVTIAIL LFVYEQKLNT LVAEGLNDSI QHYHSDNSTM KAWDFIQTQL QCCGVNGSSD  60
   61 WTSGPPSSCP SGADVQGCYN KAKSWFHSNF LYIGIITICV CVIQVLGMSF ALTLNCQIDK 120
  121 TSQALGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1g8qA
Description: CD81 extracellular domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein binding 1.71804056581958 bayes_pls_golite062009
binding 1.62531598262239 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle