YRC Public Data Repository - Protein Structure Prediction

Protein:	PSMF1_MOUSE
Organism:	Mus musculus
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSMF1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|26327249 - gi\|26327249\|dbj\|BAC27368.1\| unnamed protein product [Mus musculus]	384.0	[0..1]	[271..1]
PSMF1_RAT - Proteasome inhibitor PI31 subunit OS=Rattus norvegicus GN=Psmf1 PE=1 SV=1	379.0	[0..1]	[271..1]
GINS1, PSMF1 - proteasome (prosome, macropain) inhibitor subunit 1 (PI31), GINS complex subunit 1 (Psf1 homolog)	371.0	[0..1]	[271..1]
PSMF1_PONPY - Proteasome inhibitor PI31 subunit - Pongo pygmaeus (Orangutan) PSMF1_PONAB - Proteasome inhibitor PI31 subunit OS=Pongo abelii GN=PSMF1 PE=2 SV=1	370.0	[0..1]	[271..1]
gi\|114680478, gi... - gi\|114680478\|ref\|XP_001153170.1\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes], gi\|114...	370.0	[0..1]	[271..1]
gi\|109092554, gi... - gi\|109092556\|ref\|XP_001112759.1\| PREDICTED: proteasome inhibitor subunit 1 isoform 5 [Macaca mulatta...	368.0	[0..1]	[271..1]
gi\|73991505, gi\|... - gi\|73991505\|ref\|XP_861761.1\| PREDICTED: similar to Proteasome inhibitor PI31 subunit (hPI31) isoform...	366.0	[0..1]	[271..1]
gi\|74356497 - gi\|74356497\|gb\|AAI04536.1\| Proteasome (prosome, macropain) inhibitor subunit 1 (PI31) [Bos taurus]	364.0	[0..1]	[271..1]

Back

Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLEVLFAS AAPSMSCPQD ALVCFLHWEV VTNGYYALGT GDQPGPSDKK SELLPAKWNS  60
   61 NKELYALRYE SKDGARKLLL KAVSVENGMI INVLELGTQQ VADLTLNLDD YIDAEDLSDF 120
  121 HRTYKNSEEL RSQIRSGIIT PIHEQWEKAR ANSPPREFPP ATAR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [165-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVDPLQISSH RPHTSRQPAW RDPLSPFAVG GDDLDPFGCQ RGGMIVDPLR SGFPRVLIDP  60
   61 SSGLPNRLPP GAVPPGARFD PFGPIGTSPS GPNPDHLPPP GYDDMYL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	9.0
Match:	PF08577.2
Description:	No description for PF08577.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits