YRC Public Data Repository - Protein Structure Prediction

Protein:	IN80C_MOUSE
Organism:	Mus musculus
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IN80C_MOUSE.

Description	E-value	Query Range	Subject Range
IN80C_RAT - INO80 complex subunit C OS=Rattus norvegicus GN=Ino80c PE=2 SV=1	264.0	[0..1]	[191..1]
gi\|157279003, gi... - gi\|76672705\|ref\|XP_612826.2\| PREDICTED: hypothetical protein isoform 1 [Bos taurus], gi\|157427934\|re...	257.0	[0..1]	[191..1]
gi\|73961737 - gi\|73961737\|ref\|XP_547606.2\| PREDICTED: similar to CG12659-PB [Canis familiaris]	257.0	[0..1]	[191..55]
gi\|109121959 - gi\|109121959\|ref\|XP_001104744.1\| PREDICTED: similar to CG12659-PB [Macaca mulatta]	235.0	[0..1]	[191..1]
INO80C - INO80 complex subunit C gi\|114672823 - gi\|114672823\|ref\|XP_001135459.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]	233.0	[0..1]	[191..1]
gi\|114672821 - gi\|114672821\|ref\|XP_001135553.1\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes]	226.0	[0..1]	[191..1]
gi\|50736082 - gi\|50736082\|ref\|XP_419041.1\| PREDICTED: hypothetical protein [Gallus gallus]	183.0	[0..1]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQIPIVAA TSTPAVARNS KKRPASPSHN SSGGGYGASK KKKLSASGFA QGVSIEAMNE  60
   61 SKMASSELSS GPVEKAAKPL PFKDPNFVHS GHGGAVAGKK NRTWKNLKQI LAAERALPWQ 120
  121 LNDPNYFSID APPSFKPAKK YSDISGLLAN YTDPQSKLRF STVEEFSYIR RLPSDVVTGY 180
  181 LALRKATSIV P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits