YRC Public Data Repository - Protein Structure Prediction

Protein:	NRL_MOUSE
Organism:	Mus musculus
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRL_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|26336306 - gi\|26336306\|dbj\|BAC31838.1\| unnamed protein product [Mus musculus]	206.0	[0..1]	[237..1]
gi\|30584169, gi\|... - gi\|61370162\|gb\|AAX43447.1\| neural retina leucine zipper [synthetic construct], gi\|61370156\|gb\|AAX434...	204.0	[0..1]	[237..1]
gi\|114652258, gi... - gi\|114652262\|ref\|XP_001166039.1\| PREDICTED: neural retina leucine zipper isoform 2 [Pan troglodytes]... NRL - neural retina leucine zipper gi\|208966846, gi... - gi\|61360347\|gb\|AAX41847.1\| neural retina leucine zipper [synthetic construct], gi\|61360341\|gb\|AAX418...	204.0	[0..1]	[237..1]
gi\|57090455 - gi\|57090455\|ref\|XP_547742.1\| PREDICTED: similar to Neural retina-specific leucine zipper protein (NR...	198.0	[0..1]	[237..1]
gi\|27700060, gi\|... - gi\|27700060\|ref\|XP_224189.1\| PREDICTED: similar to Neural retina-specific leucine zipper protein (NR...	197.0	[0..1]	[237..1]
gi\|109083087, gi... - gi\|109083089\|ref\|XP_001111646.1\| PREDICTED: neural retina leucine zipper isoform 3 [Macaca mulatta],...	195.0	[0..1]	[237..1]
gi\|76626842 - gi\|76626842\|ref\|XP_599808.2\| PREDICTED: similar to Neural retina-specific leucine zipper protein (NR...	190.0	[0..1]	[226..1]
MAFA_XENTR - Transcription factor MafA OS=Xenopus tropicalis GN=mafa PE=2 SV=1	161.0	[0..3]	[230..11]
MAFA_COTJA - Transcription factor MafA OS=Coturnix coturnix japonica GN=MAFA PE=1 SV=1	158.0	[0..3]	[226..11]
gi\|12381859, gi\|... - gi\|56790311\|ref\|NP_571920.1\| v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein ...	157.0	[0..3]	[233..11]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFPPSPLAM EYVNDFDLMK FEIKREPSEG RSGVPTASLG STPYSSVPPS PTFSEPGMVG  60
   61 GGEAPRPGLE ELYWLATLQQ QLGSDEVLGL SPDEAVELLQ NQGPVSMEGP LGYYSGSPGE 120
  121 TGAQHVQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPERFSDAAL VSMSVRELNR QLRGCGRDEA LRLKQRRRTL KNRGYAQACR SKRLQQRRGL  60
   61 EAERARLAAQ LDALRAEVAR LARERDLYKA RCDRLTSGGP GSDDHTHLFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.154902
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits