YRC Public Data Repository - Protein Structure Prediction

Protein:	TIPRL_MOUSE
Organism:	Mus musculus
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIPRL_MOUSE.

Description	E-value	Query Range	Subject Range
TIPRL_RAT - TIP41-like protein OS=Rattus norvegicus GN=Tiprl PE=1 SV=1	434.0	[0..1]	[271..1]
gi\|73961397 - gi\|73961397\|ref\|XP_537207.2\| PREDICTED: similar to TIP41, TOR signalling pathway regulator-like [Can...	434.0	[0..1]	[271..202]
gi\|55588696 - gi\|55588696\|ref\|XP_513978.1\| PREDICTED: hypothetical protein XP_513978 [Pan troglodytes] TIPRL - TIP41, TOR signaling pathway regulator-like (S. cerevisiae)	423.0	[0..1]	[268..1]
gi\|114561176 - gi\|114561176\|ref\|XP_513978.2\| PREDICTED: similar to TIP41, TOR signalling pathway regulator-like (S....	421.0	[0..2]	[268..1]
gi\|109019391 - gi\|109019391\|ref\|XP_001091944.1\| PREDICTED: similar to TIP41, TOR signalling pathway regulator-like ...	405.0	[0..1]	[268..1]
gi\|50729634 - gi\|50729634\|ref\|XP_416593.1\| PREDICTED: similar to putative MAPK activating protein [Gallus gallus]	394.0	[0..6]	[261..5]
TIPRL_XENTR - TIP41-like protein OS=Xenopus tropicalis GN=tiprl PE=2 SV=1	386.0	[0..1]	[263..1]
gi\|41054878, gi\|... - gi\|41054878\|ref\|NP_956957.1\| TIP41, TOR signalling pathway regulator-like [Danio rerio], gi\|34784442...	385.0	[0..4]	[266..7]
TIPRL_XENLA - TIP41-like protein OS=Xenopus laevis GN=tiprl PE=2 SV=1	370.0	[0..1]	[256..1]
gi\|118601820, gi... - gi\|88954097\|gb\|AAI14025.1\| TIP41, TOR signaling pathway regulator-like (S. cerevisiae) [Bos taurus],...	364.0	[0..35]	[271..5]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIHGFQSSH QDFSFGPWKL TASKTHIMKS ADVEKLADEL HMPSLPEMMF GDNVLRIQHG  60
   61 SGFGIEFNAT DALRCVNNYQ GMLKVACAEE WQESRTEGEH SKEVIKPYDW TYTTDYKGTL 120
  121 LGESLKLKVV PTTDHIDTEK LKAREQIKFF EEVLLFEDEL HDHGVSSLSV KIRVMPSSFF 180
  181 LLLRFFLRID GVLIRMNDTR LYHEADKTYM LREYTSRESK IANLMHVPPS LFTEPNEISQ 240
  241 YLPIKEAVCE KLVFPERIDP NPVDSQSTPS E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	130.346787
Match:	PF04176.4
Description:	No description for PF04176.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits