YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109472958, gi...
Organism:	Rattus norvegicus
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109472958, gi....

Description	E-value	Query Range	Subject Range
gi\|73976488 - gi\|73976488\|ref\|XP_539468.2\| PREDICTED: similar to Probable mitochondrial import receptor subunit TO...	99.0	[0..1]	[55..67]
TOMM7 - translocase of outer mitochondrial membrane 7 homolog (yeast)	91.0	[0..1]	[55..1]
ENSPTRT000000664... - null, null gi\|109067186 - gi\|109067186\|ref\|XP_001102062.1\| PREDICTED: translocase of outer mitochondrial membrane 7 homolog (y... CCDS5376.1_1 - null tr\|F6YSW8\|F6YSW8... - Translocase of outer mitochondrial membrane 7 OS=Equus caballus OX=9796 GN=TOMM7 PE=4 SV=1 TOM7_PIG - Mitochondrial import receptor subunit TOM7 homolog OS=Sus scrofa GN=TOMM7 PE=3 SV=1 ENSCJAT00000002638 - null TOM7_BOVIN - Mitochondrial import receptor subunit TOM7 homolog OS=Bos taurus GN=TOMM7 PE=3 SV=1	90.0	[0..1]	[55..1]
gi\|114612635 - gi\|114612635\|ref\|XP_001153870.1\| PREDICTED: hypothetical protein [Pan troglodytes]	90.0	[0..1]	[54..1]
gi\|47210764 - gi\|47210764\|emb\|CAF89564.1\| unnamed protein product [Tetraodon nigroviridis]	87.0	[0..1]	[55..1]
gi\|125844479, gi... - gi\|240120158\|ref\|NP_001154959.1\| translocase of outer mitochondrial membrane 7 homolog [Danio rerio]...	87.0	[0..1]	[55..1]
gi\|62857635, gi\|... - gi\|62857635\|ref\|NP_001017214.1\| translocase of outer mitochondrial membrane 7 homolog [Xenopus (Silu...	85.0	[0..1]	[55..1]
FBpp0308412, Tom7-PA - The gene Translocase of outer membrane 7 is referred to in FlyBase by the symbol Dmel\Tom7 (CG8226, ... gi\|220957954, gi... - gi\|220957954\|gb\|ACL91520.1\| Tom7-PA [synthetic construct], gi\|220950960\|gb\|ACL88023.1\| Tom7-PA [synt...	80.0	[0..2]	[54..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLSKEAKQ RLQQLFKGGQ FAIRWGFIPL VIYLGFTRGA DPGMPEPSVL SLLWG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits