YRC Public Data Repository - Protein Structure Prediction

Protein:	COQ4_MOUSE
Organism:	Mus musculus
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114626918 - gi\|114626918\|ref\|XP_520291.2\| PREDICTED: coenzyme Q4 homolog isoform 2 [Pan troglodytes]	369.0	[0..1]	[266..1]
COQ4 - coenzyme Q4 homolog (S. cerevisiae) HGNC:19693\|MIM:6... - Q4 homolog (S. cerevisiae) gi\|117646840 - gi\|117646840\|emb\|CAL37535.1\| hypothetical protein [synthetic construct]	367.0	[0..1]	[266..1]
COQ4_RAT - Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Rattus norvegicus GN=Coq4 PE=2 SV=1	363.0	[0..1]	[266..1]
gi\|46129366, gi\|... - gi\|46129366\|ref\|XP_389044.1\| hypothetical protein FG08868.1 [Gibberella zeae PH-1], gi\|42549199\|gb\|E...	327.0	[0..32]	[260..313]
COQ4_MAGO7 - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4... COQ4_MAGGR - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Magnaporthe grisea GN=COQ4 PE=3 SV=1	327.0	[0..8]	[260..7]
FBpp0298344, CG3... - This gene is referred to in FlyBase by the symbol Dmel\CG32174 (CG32174, FBgn0052174). It is a prote...	327.0	[0..6]	[256..8]
COQ4_NEUCR - Ubiquinone biosynthesis protein coq-4, mitochondrial OS=Neurospora crassa GN=coq-4 PE=2 SV=1 COQ4_NEUCR - Ubiquinone biosynthesis protein coq-4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR...	322.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLLLLRSL RLHRSLRPRT RPAVDVPLRA GSHGARLLYP DHIPTTPLQK MLLAAGAAGM  60
   61 ALYNPYRHDM VAVLGETTGC HTLKFLRDQM KKDPEGAQIL QERPRISLST LDLSKLQSLP 120
  121 EGSLGREYLR FLDVNKVSPD TRAPTRFVDD EELAYVIQRY REVHDMLHTL LGMPTNMLGE 180
  181 VVVKWFEAVQ TGLPMCILGA LFGPIRLRTQ SLQVLFSELI PWAIQNGRRA PCVLNIYYEQ 240
  241 RWEQPLTALR EELGISPPPK HIQGLA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits