YRC Public Data Repository - Protein Structure Prediction

Protein:	LHPL2_MOUSE
Organism:	Mus musculus
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHPL2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109465907, gi... - gi\|157822913\|ref\|NP_001099872.1\| lipoma HMGIC fusion partner-like 2 [Rattus norvegicus], gi\|14905906...	285.0	[0..1]	[222..1]
gi\|114599512 - gi\|114599512\|ref\|XP_526884.2\| PREDICTED: lipoma HMGIC fusion partner-like 2 [Pan troglodytes] LHFPL2 - lipoma HMGIC fusion partner-like 2	266.0	[0..1]	[222..1]
gi\|109077716 - gi\|109077716\|ref\|XP_001108010.1\| PREDICTED: similar to lipoma HMGIC fusion partner-like 2 [Macaca mu...	257.0	[0..1]	[222..1]
LHPL2_DANRE - Lipoma HMGIC fusion partner-like 2 protein OS=Danio rerio GN=lhfpl2 PE=2 SV=1	255.0	[0..1]	[222..1]
gi\|47228433 - gi\|47228433\|emb\|CAG05253.1\| unnamed protein product [Tetraodon nigroviridis]	249.0	[0..1]	[222..1]
gi\|50755284 - gi\|50755284\|ref\|XP_414683.1\| PREDICTED: similar to HMGIC fusion partner-like 2 [Gallus gallus]	246.0	[0..1]	[222..1]
gi\|73985024 - gi\|73985024\|ref\|XP_541784.2\| PREDICTED: similar to HMGIC fusion partner-like protein 4 [Canis famili...	221.0	[0..10]	[213..83]
AGAP009941-PA - \|protein_coding\|3R:45755902:45766669:1\|gene:AGAP009941 gi\|157014126, gi... - gi\|58392058\|ref\|XP_319072.2\| ENSANGP00000013360 [Anopheles gambiae str. PEST], gi\|55236159\|gb\|EAA140...	220.0	[0..1]	[222..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCHVIVTCRS MLWTLLSIVV AFAELVAFMS ADWLIGKAKT RSGSGDEQAG MNSEPHYLGI  60
   61 LCIRTPAMQQ VSRDTLCGTY AKSFGEIASG FWQATAIFLA VGIFILCVVA LVSVFTMCVQ 120
  121 SIMRKSIFNV CGLLQGIAGL FLILGLILYP AG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [153-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WGCQKAIDCG RYASPYKPGD CSLGWAFYTA TGGTVLTFIC AVFSAQAEIA TSSDKVQEEI  60
   61 EEGKNLVCLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits