YRC Public Data Repository - Protein Structure Prediction

Protein:	CRYAA_MOUSE
Organism:	Mus musculus
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRYAA_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|115299195 - gi\|115299195\|gb\|ABI93622.1\| alphaAins-crystallin [Cavia porcellus]	195.0	[0..1]	[196..1]
CRYAA_MESAU - Alpha-crystallin A chain OS=Mesocricetus auratus GN=CRYAA PE=1 SV=1	195.0	[0..1]	[196..1]
CRYAA_RAT - Alpha-crystallin A chain OS=Rattus norvegicus GN=Cryaa PE=1 SV=1	194.0	[0..1]	[196..1]
CRYAA_SPAEH - Alpha-crystallin A chain OS=Spalax ehrenbergi GN=CRYAA PE=3 SV=1	186.0	[0..1]	[194..1]
gi\|74001328 - gi\|74001328\|ref\|XP_849950.1\| PREDICTED: similar to Alpha crystallin A chain isoform 3 [Canis familia...	181.0	[0..1]	[196..1]
CRYAA - crystallin, alpha A gi\|114684552 - gi\|114684552\|ref\|XP_514927.2\| PREDICTED: crystallin, alpha A [Pan troglodytes]	173.0	[0..1]	[196..1]
CRYAA_LOXAF - Alpha-crystallin A chain OS=Loxodonta africana GN=CRYAA PE=1 SV=1	173.0	[0..1]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVTIQHPWF KRALGPFYPS RLFDQFFGEG LFEYDLLPFL SSTISPYYRQ SLFRTVLDSG  60
   61 ISELMTHMWF VMHQPHAGNP KNNPVKVRSD RDKFVIFLDV KHFSPEDLTV KVLEDFVEIH 120
  121 GKHNERQDDH GYISREFHRR YRLPSNVDQS ALSCSLSADG MLTFSGPKVQ SGLDAGHSER 180
  181 AIPVSREEKP SSAPSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.221849
Match:	2bolA
Description:	CRYSTAL STRUCTURE AND ASSEMBLY OF TSP36, A METAZOAN SMALL HEAT SHOCK PROTEIN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits