YRC Public Data Repository - Protein Structure Prediction

Protein:	SH3L2_MOUSE
Organism:	Mus musculus
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SH3L2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|47125277 - gi\|47125277\|gb\|AAH70059.1\| SH3BGRL2 protein [Homo sapiens]	125.0	[0..1]	[107..45]
gi\|73973848 - gi\|73973848\|ref\|XP_532212.2\| PREDICTED: similar to SH3 domain binding glutamic acid-rich protein lik...	124.0	[0..1]	[107..157]
gi\|55725939 - gi\|55725939\|emb\|CAH89748.1\| hypothetical protein [Pongo abelii] SH3L2_PONAB - SH3 domain-binding glutamic acid-rich-like protein 2 OS=Pongo abelii GN=SH3BGRL2 PE=3 SV=1	123.0	[0..1]	[107..1]
gi\|41052897, gi\|... - gi\|50904589\|ref\|XP_463783.1\| peptide transporter protein-like [Oryza sativa (japonica cultivar-group... gi\|125537685 - gi\|125537685\|gb\|EAY84080.1\| hypothetical protein OsI_005313 [Oryza sativa (indica cultivar-group)]	122.0	[0..3]	[101..129]
gi\|26327905 - gi\|26327905\|dbj\|BAC27693.1\| unnamed protein product [Mus musculus]	120.0	[0..1]	[104..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVRVFVASC SGFVAIKKKQ QDVVRFLEAN KIEFEEVDIT MSEEQRQWMY KNIPPEKKPA  60
   61 QGNPLPPQIF NGDRYCGDYD SFFESKESNT VFSFLGLKPR PASTAEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	2ct6A
Description:	solution structure of the sh3 domain-binding glutamic acid-rich-like protein 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits