YRC Public Data Repository - Protein Structure Prediction

Protein:	RL10_MOUSE
Organism:	Mus musculus
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL10_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109132846 - gi\|109132846\|ref\|XP_001089131.1\| PREDICTED: similar to ribosomal protein L10 [Macaca mulatta]	328.0	[0..1]	[214..58]
gi\|74212071 - gi\|74212071\|dbj\|BAE40200.1\| unnamed protein product [Mus musculus]	326.0	[0..1]	[214..1]
gi\|60834521 - gi\|60834521\|gb\|AAX37098.1\| ribosomal protein L10 [synthetic construct]	326.0	[0..1]	[214..1]
RPL10 - ribosomal protein L10 gi\|60654969, gi\|... - gi\|60654969\|gb\|AAX32048.1\| ribosomal protein L10 [synthetic construct], gi\|117645498\|emb\|CAL38215.1\|...	325.0	[0..1]	[214..1]
RL10_PONPY - 60S ribosomal protein L10 - Pongo pygmaeus (Orangutan) RL10_PONAB - 60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3	324.0	[0..1]	[214..1]
RL10_SHEEP - 60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1 RL10_BOVIN - 60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4 RL10_PIG - 60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=1 SV=3 gi\|51814392 - gi\|51814392\|gb\|AAU09485.1\| GekBS044P [Gekko japonicus]	324.0	[0..1]	[214..1]
gi\|187609306 - gi\|187609306\|pdb\|2ZKR\|HH Chain h, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... gi\|4929242, gi\|2... - gi\|4929242\|gb\|AAD33912.1\|AF143815_1 ribosomal protein [Bos taurus], gi\|27807465\|ref\|NP_777185.1\| rib...	323.0	[0..1]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRPARCYR YCKNKPYPKS RFCRGVPDAK IRIFDLGRKK AKVDEFPLCG HMVSDEYEQL  60
   61 SSEALEAARI CANKYMVKSC GKDGFHIRVR LHPFHVIRIN KMLSCAGADR LQTGMRGAFG 120
  121 KPQGTVARVH IGQVIMSIRT KLQNKEHVIE ALRRAKFKFP GRQKIHISKK WGFTKFNADE 180
  181 FEDMVAEKRL IPDGCGVKYI PNRGPLDKWR ALHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1s1iI
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits