YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56204111, gi\|...
Organism:	Homo sapiens
Length:	860 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56204111, gi|....

Description	E-value	Query Range	Subject Range
gi\|37678370, gi\|... - gi\|37678370\|ref\|NP_932979.1\| DNA polymerase I [Vibrio vulnificus YJ016], gi\|37197109\|dbj\|BAC92950.1\|...	696.0	[0..2]	[797..90]
gi\|123226356, gi... - gi\|20381286\|gb\|AAH27840.1\| Exosc10 protein [Mus musculus], gi\|123248912\|emb\|CAM21194.1\| exosome comp...	695.0	[0..1]	[860..1]
gi\|86146596, gi\|... - gi\|86146596\|ref\|ZP_01064918.1\| DNA polymerase I [Vibrio sp. MED222], gi\|85835653\|gb\|EAQ53789.1\| DNA ...	692.0	[0..2]	[793..64]
gi\|27364348, gi\|... - gi\|27364348\|ref\|NP_759876.1\| DNA polymerase I [Vibrio vulnificus CMCP6], gi\|27360467\|gb\|AAO09403.1\|A...	692.0	[0..2]	[797..64]
gi\|89949322, gi\|... - gi\|90019722\|ref\|YP_525549.1\| DNA polymerase I [Saccharophagus degradans 2-40], gi\|89949322\|gb\|ABD793...	692.0	[0..2]	[797..63]
gi\|84378729, gi\|... - gi\|84386305\|ref\|ZP_00989333.1\| DNA polymerase I [Vibrio splendidus 12B01], gi\|84378729\|gb\|EAP95584.1...	692.0	[0..2]	[793..64]
gi\|59710681, gi\|... - gi\|59710681\|ref\|YP_203457.1\| DNA polymerase I [Vibrio fischeri ES114], gi\|59478782\|gb\|AAW84569.1\| fu...	687.0	[0..2]	[793..64]
gi\|28805089 - gi\|28805089\|dbj\|BAC58370.1\| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi\|28896881, gi\|... - gi\|28896881\|ref\|NP_796486.1\| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633], gi\|28805089\|db...	687.0	[0..2]	[797..64]
gi\|37524397, gi\|... - gi\|37524397\|ref\|NP_927741.1\| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1], gi\|3...	686.0	[0..2]	[793..64]
gi\|77960492, gi\|... - gi\|77960492\|ref\|ZP_00824361.1\| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains ...	685.0	[0..2]	[793..64]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPSTREPR VLSATSATKS DGEMVLPGFP DADSFVKFAL GSVVAVTKAS GGLPQFGDEY  60
   61 DFYRSFPGFQ AFCETQGDRL LQCMSRVMQY HGCRSNIKDR SKVTELEDKF DLLVDANDVI 120
  121 LERVGILLDE ASGVNKNQQP VLPAGLQVPK TVVSSWNRKA AEYGKKAKSE TFRLLHAKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1exnA
Description:	T5 5'-exonuclease
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [180-581]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIRPQLKFRE KIDNSNTPFL PKIFIKPNAQ KPLPQALSKE RRERPQDRPE DLDVPPALAD  60
   61 FIHQQRTQQV EQDMFAHPYQ YELNHFTPAD AVLQKPQPQL YRPIEETPCH FISSLDELVE 120
  121 LNEKLLNCQE FAVDLEHHSY RSFLGLTCLM QISTRTEDFI IDTLELRSDM YILNESLTDP 180
  181 AIVKVFHGAD SDIEWLQKDF GLYVVNMFDT HQAARLLNLG RHSLDHLLKL YCNVDSNKQY 240
  241 QLADWRIRPL PEEMLSYARD DTHYLLYIYD KMRLEMWERG NGQPVQLQVV WQRSRDICLK 300
  301 KFIKPIFTDE SYLELYRKQK KHLNTQQLTA FQLLFAWRDK TARREDESYG YVLPNHMMLK 360
  361 IAEELPKEPQ GIIACCNPVP PLVRQQINEM HLLIQQAREM PL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	2hbjA
Description:	No description for 2hbjA was found.

Predicted Domain #3

Region A:
Residues: [582-795]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKSEVAAGVK KSGPLPSAER LENVLFGPHD CSHAPPDGYP IIPTSGSVPV QKQASLFPDE  60
   61 KEDNLLGTTC LIATAVITLF NEPSAEDSKK GPLTVAQKKA QNIMESFENP FRMISNRWKL 120
  121 AQVQVQKDSK EAVKKKAAEQ TAAREQAKEA CKAAAEQAIS VRQQVVLENA AKKRERATSD 180
  181 PRTTEQKQEK KRLKISKKPK DPEPPEKEFT PYDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	2ajqA
Description:	No description for 2ajqA was found.

Predicted Domain #4

Region A:
Residues: [796-860]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQSDFKAFAG NSKSKVSSQF DPNKQTPSGK KCIAAKKIKQ SVGNKSMSFP TGKSDRGFRY  60
   61 NWPQR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits