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View Structure Prediction Details

Protein: NUP35
Organism: Homo sapiens
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP35.

Description E-value Query
Range		 Subject
Range
gi|109100292 - gi|109100292|ref|XP_001102848.1| PREDICTED: similar to nucleoporin 35kDa isoform a [Macaca mulatta]
CCDS2290.1_1 - null
 0.0 [1..326] [1..326]
NUP53_RAT - Nucleoporin NUP53 OS=Rattus norvegicus GN=Nup35 PE=1 SV=1
 0.0 [1..326] [1..325]
gi|19223939 - gi|19223939|gb|AAL86379.1|AF411516_1 mitotic phosphoprotein 44 [Homo sapiens]
 0.0 [1..326] [1..326]
NUP53_MOUSE - Nucleoporin NUP53 OS=Mus musculus GN=Nup35 PE=1 SV=2
 0.0 [1..326] [1..325]
gi|74004948 - gi|74004948|ref|XP_535992.2| PREDICTED: similar to nucleoporin 35kDa isoform a [Canis familiaris]
 0.0 [14..326] [91..406]
gi|76660805 - gi|76660805|ref|XP_588545.2| PREDICTED: similar to nucleoporin Nup35 [Bos taurus]
 0.0 [7..326] [53..373]
gi|114582063 - gi|114582063|ref|XP_001160265.1| PREDICTED: nucleoporin 35kDa isoform 2 [Pan troglodytes]
 0.0 [1..326] [1..337]

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Predicted Domain #1
Region A:
Residues: [1-168] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFAVEPQG PALGSEPMML GSPTSPKPGV NAQFLPGFLM GDLPAPVTPQ PRSISGPSVG  60
   61 VMEMRSPLLA GGSPPQPVVP AHKDKSGAPP VRSIYDDISS PGLGSTPLTS RRQPNISVMQ 120
  121 SPLVGVTSTP GTGQSMFSPA SIGQPRKTTL SPAQLDPFYT QGDSLTSE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [169-326] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHLDDSWVTV FGFPQASASY ILLQFAQYGN ILKHVMSNTG NWMHIRYQSK LQARKALSKD  60
   61 GRIFGESIMI GVKPCIDKSV MESSDRCALS SPSLAFTPPI KTLGTPTQPG STPRISTMRP 120
  121 LATAYKASTS DYQVISDRQT PKKDESLVSK AMEYMFGW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 1wwhA
Description: Crystal structure of the MPPN domain of mouse Nup35
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle