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View Structure Prediction Details

Protein: unc-83
Organism: Caenorhabditis elegans
Length: 740 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for unc-83.

Description E-value Query
Range
Subject
Range
unc-83 - status:Confirmed UniProt:Q23064 protein_id:AAB04966.2
1308.0 [0..1] [740..302]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGRVTVDSC TSSSEDQMVE QSTNKKWESV LQDVGYSSGE NSIHEALNTC ADHLVPETSD  60
   61 MRRKRIECSP VKAFYRTVQL EDMSDLEVTK AINHDVEEEP NLSDSMYVNH DSTFLATQNL 120
  121 PEYDEVMALM DDDDLPMDMS MTESFNTKWR EIHGQKKPLR RASRPSREQM NLIAKSSCDA 180
  181 SSEDSSEGEN QTNLED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [197-740]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPEMMSVSFN SAQFDTSSPL KRQRSARGLK NASFLYDSLE MDGSFCSTRS EMLPPCKTRS  60
   61 LARRKLRVRR MPRSMSDGEQ LGVVSSKPEG MMTPMIRVSP PSTPVRRLLR KLDEQIRNRD 120
  121 SDTAPEHSDA AQAYEWDEYN PPQKDDSISD RHIQTMTDIS DQLMNIDDDF AEHFGTSSAI 180
  181 RLIEESKSHL RVVLKALEES DSNIPQLSNF ELIARSNLRQ VDEALKIQSG NQPSFLETST 240
  241 LQDLRSEWAN LYESIRSPFA RIMHQVKKFA ATLQEVSSMA SLGDVDIRSK EDVAKTLDAV 300
  301 TAIERRLSSE RQELRDLLAS SSFRDVAKDL SCEFESVSEG YDDAVDKIGK MAHSLSQVKG 360
  361 EWDAWNSRQN DIRNAMVRIE SHLKEGQMDN KMIADEMELC QERMNSLETM CNYLTASLGS 420
  421 IQNESNSKNL PDFKAELSIY SNALARLKDR FNDMIRVPTP PTVQFHPPEP LPSLARSMTT 480
  481 QTAEMESETE NEPLTIAEAI SSSRLIKFTF ALSLLAALAA IFYYHVFGKP FGPHVTYVNG 540
  541 PPPV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.44
Match: 1ciiA
Description: COLICIN IA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle