YRC Public Data Repository - Protein Structure Prediction

Protein:	TUSB_SHIF8
Organism:	Shigella flexneri 5 str. 8401
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TUSB_SHIF8.

Description	E-value	Query Range	Subject Range
TUSB_ECOL6 - Protein TusB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tusB PE=3 SV=1 TUSB_ECOK1 - Protein TusB OS=Escherichia coli O1:K1 / APEC GN=tusB PE=3 SV=1 TUSB_ECOL6 - Protein TusB OS=Escherichia coli O6 GN=tusB PE=3 SV=1 gi\|226902338, gi... - gi\|237703074\|ref\|ZP_04533555.1\| tRNA 2-thiouridine synthesizing protein B [Escherichia sp. 3_2_53FAA... TUSB_ECOUT - Protein TusB OS=Escherichia coli (strain UTI89 / UPEC) GN=tusB PE=3 SV=1 TUSB_ECO45 - Protein TusB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tusB PE=3 SV=1 gi\|227839356, gi... - gi\|227883477\|ref\|ZP_04001282.1\| tRNA 2-thiouridine synthesizing protein B [Escherichia coli 83972], ...	135.0	[0..1]	[95..1]
gi\|168785151, gi... - gi\|189374614\|gb\|EDU93030.1\| sulfur relay protein TusD/DsrH [Escherichia coli O157:H7 str. EC869], gi... gi\|189361800, gi... - gi\|189361800\|gb\|EDU80219.1\| sulfur relay protein TusD/DsrH [Escherichia coli O157:H7 str. EC4486], g... gi\|168753100, gi... - gi\|189358821\|gb\|EDU77240.1\| sulfur relay protein TusD/DsrH [Escherichia coli O157:H7 str. EC4401], g... gi\|254795266, gi... - gi\|254795266\|ref\|YP_003080103.1\| subunit of the heterohexameric YheLMN (TusBCD) mediator of sulfur r... gi\|13363667, gi\|... - gi\|15833448\|ref\|NP_312221.1\| sulfur transfer complex subunit TusB [Escherichia coli O157:H7 str. Sak... gi\|209756986, gi... - pir\|\|F85998 hypothetical protein yheL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12517964, gi\|... - gi\|15803856\|ref\|NP_289890.1\| tRNA 2-thiouridine synthesizing protein B [Escherichia coli O157:H7 EDL... TUSB_ECO57 - Protein TusB OS=Escherichia coli O157:H7 GN=tusB PE=3 SV=1 gi\|208814494, gi... - gi\|208814494\|ref\|ZP_03255823.1\| sulfur relay protein TusD/DsrH [Escherichia coli O157:H7 str. EC4045... gi\|208805676, gi... - gi\|208805676\|ref\|ZP_03248013.1\| sulfur relay protein TusD/DsrH [Escherichia coli O157:H7 str. EC4206... gi\|195934839 - gi\|195934839\|ref\|ZP_03080221.1\| tRNA 2-thiouridine synthesizing protein B [Escherichia coli O157:H7 ... gi\|189375228, gi... - gi\|189375228\|gb\|EDU93644.1\| sulfur relay protein TusD/DsrH [Escherichia coli O157:H7 str. EC508], gi... gi\|217320661, gi... - gi\|217324440\|ref\|ZP_03440524.1\| sulfur relay protein TusD/DsrH [Escherichia coli O157:H7 str. TW1458... TUSB_ECO5E - Protein TusB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tusB PE=3 SV=1	135.0	[0..1]	[95..1]
TUSB_ECO81 - Protein TusB OS=Escherichia coli O81 (strain ED1a) GN=tusB PE=3 SV=1 gi\|75241562, gi\|... - gi\|75241562\|ref\|ZP_00725407.1\| COG2168: Uncharacterized conserved protein involved in oxidation of i... TUSB_ECOL5 - Protein TusB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tusB PE=3 SV=1	135.0	[0..1]	[95..1]
TUSB_SHIBS - Protein TusB OS=Shigella boydii serotype 4 (strain Sb227) GN=tusB PE=3 SV=1 gi\|253771831, gi... - gi\|254290021\|ref\|YP_003055769.1\| predicted intracellular sulfur oxidation protein [Escherichia coli ... gi\|242378869, gi... - gi\|251786596\|ref\|YP_003000900.1\| hypothetical protein B21_03145 [Escherichia coli BL21], gi\|24237886... gi\|209756978, gi... - gi\|209756984\|gb\|ACI76804.1\| hypothetical protein ECs4194 [Escherichia coli], gi\|209756978\|gb\|ACI7680... gi\|253975172, gi... - gi\|254163271\|ref\|YP_003046379.1\| predicted intracellular sulfur oxidation protein [Escherichia coli ... TUSB_ECOHS - Protein TusB OS=Escherichia coli O9:H4 (strain HS) GN=tusB PE=3 SV=1 TUSB_ECO24 - Protein TusB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tusB PE=3 SV=1 TUSB_SHIB3 - Protein TusB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tusB PE=3 SV=1 TUSB_ECOLU - Protein TusB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tusB PE=3 SV=1 TUSB_ECO55 - Protein TusB OS=Escherichia coli (strain 55989 / EAEC) GN=tusB PE=3 SV=1 TUSB_ECO7I - Protein TusB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tusB PE=3 SV=1 gi\|193061765, gi... - gi\|75260367\|ref\|ZP_00731635.1\| COG2168: Uncharacterized conserved protein involved in oxidation of i... gi\|188492772, gi... - gi\|188492772\|ref\|ZP_03000042.1\| sulfur relay protein TusD/DsrH [Escherichia coli 53638], gi\|18848797... gi\|190900120, gi... - gi\|191169840\|ref\|ZP_03031444.1\| sulfur relay protein TusD/DsrH [Escherichia coli B7A], gi\|190900120\|... TUSB_ECO27 - Protein TusB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=tusB PE=3 SV=1 TUSB_ECO8A - Protein TusB OS=Escherichia coli O8 (strain IAI1) GN=tusB PE=3 SV=1 gi\|194416211, gi... - gi\|194435546\|ref\|ZP_03067661.1\| sulfur relay protein TusD/DsrH [Shigella dysenteriae 1012], gi\|19441... sp\|B7UK53\|TUSB_ECO27 - Protein tusB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=tusB PE=3 SV=1 TUSB_ECOSE - Protein TusB OS=Escherichia coli (strain SE11) GN=tusB PE=3 SV=1	135.0	[0..1]	[95..1]
gi\|226839011, gi... - gi\|254038505\|ref\|ZP_04872561.1\| predicted protein [Escherichia sp. 1_1_43], gi\|226839011\|gb\|EEH71034... TUSB_ECOBW - Protein TusB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=tusB PE=3 SV=1 EG12896 - mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein / 2-thiolation step of mnm(5)-s(2)U34-tRNA synthe... EG12896 - mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein / 2-thiolation step of mnm(5)-s(2)U34-tRNA synthe... gi\|89110667, gi\|... - gi\|89110667\|ref\|AP_004447.1\| predicted intracellular sulfur oxidation protein [Escherichia coli str.... TUSB_ECODH - Protein TusB OS=Escherichia coli (strain K12 / DH10B) GN=tusB PE=3 SV=1 TUSB_ECOLI, YHEL... - (P45530) Hypothetical protein yheL, Protein tusB (tRNA 2-thiouridine synthesizing protein B) - Esche...	133.0	[0..1]	[95..1]
TUSB_SHIDS - Protein TusB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tusB PE=3 SV=1	133.0	[0..1]	[95..1]
TUSB_SHISS - Protein TusB OS=Shigella sonnei (strain Ss046) GN=tusB PE=3 SV=1	132.0	[0..1]	[95..1]
TUSB_PHOLL - Protein TusB OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) GN=... TUSB_PHOLL - Protein tusB OS=Photorhabdus luminescens subsp. laumondii GN=tusB PE=3 SV=1	131.0	[0..1]	[95..1]
TUSB_SALPA - Protein TusB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=tusB PE=3 SV=1 TUSB_SALPB - Protein TusB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tusB PE=3 SV=1 TUSB_SALTI - Protein tusB OS=Salmonella typhi GN=tusB PE=3 SV=1 gi\|214000188 - gi\|214000188\|ref\|ZP_03410923.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp... gi\|213586431 - gi\|213586431\|ref\|ZP_03368257.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp... gi\|213609496 - gi\|213609496\|ref\|ZP_03369322.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp... gi\|213649029 - gi\|213649029\|ref\|ZP_03379082.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp... gi\|213865461 - gi\|213865461\|ref\|ZP_03387580.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp... gi\|29139959, gi\|... - gi\|29144321\|ref\|NP_807663.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp. e... TUSB_SALA4 - Protein TusB OS=Salmonella agona (strain SL483) GN=tusB PE=3 SV=1 gi\|16762834 - gi\|16762834\|ref\|NP_458451.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp. e... TUSB_SALPK - Protein TusB OS=Salmonella paratyphi A (strain AKU_12601) GN=tusB PE=3 SV=1 gi\|213163700 - gi\|213163700\|ref\|ZP_03349410.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp... TUSB_SALTI - Protein TusB OS=Salmonella typhi GN=tusB PE=3 SV=1 gi\|213426777 - gi\|213426777\|ref\|ZP_03359527.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp... TUSB_SALPB - Protein tusB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tusB PE=3 SV=1 gi\|197291572, gi... - gi\|197291572\|gb\|EDY30924.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica sero... TUSB_SALPA - Protein TusB OS=Salmonella paratyphi A GN=tusB PE=3 SV=1 TUSB_SALSV - Protein TusB OS=Salmonella schwarzengrund (strain CVM19633) GN=tusB PE=3 SV=1	127.0	[0..1]	[95..1]
TUSB_SALNS - Protein TusB OS=Salmonella newport (strain SL254) GN=tusB PE=3 SV=1 TUSB_SALHS - Protein TusB OS=Salmonella heidelberg (strain SL476) GN=tusB PE=3 SV=1 gi\|205350247, gi... - gi\|205350247\|gb\|EDZ36878.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica sero... gi\|195632400, gi... - gi\|195632400\|gb\|EDX50884.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica sero... gi\|205333183, gi... - gi\|205333183\|gb\|EDZ19947.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica sero... gi\|168241580, gi... - gi\|205338966\|gb\|EDZ25730.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica sero... gi\|167994546, gi... - gi\|205327579\|gb\|EDZ14343.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica sero... TUSB_SALTY - Protein TusB OS=Salmonella typhimurium GN=tusB PE=3 SV=1 TUSB_SALCH - Protein TusB OS=Salmonella choleraesuis GN=tusB PE=3 SV=1 TUSB_SALCH - Protein TusB OS=Salmonella choleraesuis (strain SC-B67) GN=tusB PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yheL] [protein=tRNA 2-thiouridine synthesizing protein B] [protein_id=YP_005239640.1] [locatio... TUSB_SALTY - Protein TusB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=tusB PE=3 SV=1 gi\|238913572 - gi\|238913572\|ref\|ZP_04657409.1\| tRNA 2-thiouridine synthesizing protein B [Salmonella enterica subsp... TUSB_SALCH - Protein tusB OS=Salmonella choleraesuis GN=tusB PE=3 SV=1 gi\|200389017, gi... - gi\|200389017\|ref\|ZP_03215629.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica ... TUSB_SALTY - Protein tusB OS=Salmonella typhimurium GN=tusB PE=3 SV=1 gi\|194471491, gi... - gi\|194471491\|ref\|ZP_03077475.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica ... TUSB_SALAR - Protein TusB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tusB PE=3 SV=1 gi\|197264441, gi... - gi\|197264441\|ref\|ZP_03164515.1\| sulfur relay protein TusB/DsrH [Salmonella enterica subsp. enterica ...	126.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHTLHRSPW LTDFAALLRL LSEGDELLLL QDGVTAAVDG NRYLESLRNA PIKVYALNED  60
   61 LIARGLTGQI LNDIIPIDYT DFVRLTVKHS SQMAW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.09691
Match:	2d1pC
Description:	crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits