YRC Public Data Repository - Protein Structure Prediction

Protein:	YEJL_SHIF8
Organism:	Shigella flexneri 5 str. 8401
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEJL_SHIF8.

Description	E-value	Query Range	Subject Range
gi\|45435579, gi\|... - gi\|45440721\|ref\|NP_992260.1\| hypothetical protein YP_0880 [Yersinia pestis biovar Microtus str. 9100... gi\|21959827, gi\|... - gi\|22126800\|ref\|NP_670223.1\| hypothetical protein y2923 [Yersinia pestis KIM], gi\|21959827\|gb\|AAM864...	121.0	[0..1]	[75..12]
Y1297_YERPS - UPF0352 protein YPTB1297 OS=Yersinia pseudotuberculosis GN=YPTB1297 PE=3 SV=1 gi\|238796848, gi... - gi\|77962644\|ref\|ZP_00826462.1\| COG3082: Uncharacterized protein conserved in bacteria [Yersinia moll... Y1485_YERPG - UPF0352 protein YpAngola_A1485 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1485 PE=3... Y2722_YERP3 - UPF0352 protein YpsIP31758_2722 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|149291129, gi... - gi\|149366755\|ref\|ZP_01888789.1\| hypothetical protein YPE_1993 [Yersinia pestis CA88-4125], gi\|149291... Y2433_YERPP - UPF0352 protein YPDSF_2433 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_2433 PE=3 SV=1 gi\|167400322, gi... - gi\|167400322\|ref\|ZP_02305835.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166211371, gi... - gi\|166211371\|ref\|ZP_02237406.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167424095, gi... - gi\|167424095\|ref\|ZP_02315848.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167419498, gi... - gi\|167419498\|ref\|ZP_02311251.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1389_YERPB - UPF0352 protein YPTS_1389 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1389 PE=... gi\|165936111, gi... - gi\|89103605\|ref\|ZP_01176175.1\| COG3082: Uncharacterized protein conserved in bacteria [Yersinia pest... Y2797_YERPY - UPF0352 protein YPK_2797 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_2797 PE=3... Y979_YERPA - UPF0352 protein YPA_0979 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0979 PE=3 SV=1 Y2715_YERPN - UPF0352 protein YPN_2715 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2715 PE=3 SV=1 gi\|229841210, gi... - gi\|229841210\|ref\|ZP_04461369.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... Y1297_YERPS - UPF0352 protein YPTB1297 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1297 PE=3... gi\|161511423 - gi\|161511423\|ref\|NP_992260.2\| hypothetical protein YP_0880 [Yersinia pestis biovar Microtus str. 910... gi\|229689662, gi... - gi\|229843315\|ref\|ZP_04463461.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Y1261_YERPE - UPF0352 protein YPO1261/y2923/YP_0880 OS=Yersinia pestis GN=YPO1261 PE=3 SV=1 gi\|161484772 - gi\|161484772\|ref\|NP_670223.2\| hypothetical protein y2923 [Yersinia pestis KIM] gi\|229703843, gi... - gi\|229894178\|ref\|ZP_04509363.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229703843\|gb\|EEO... gi\|166009736, gi... - gi\|166009736\|ref\|ZP_02230634.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|218928415, gi... - gi\|218928415\|ref\|YP_002346290.1\| hypothetical protein YPO1261 [Yersinia pestis CO92], gi\|16121547\|re... gi\|165924461, gi... - gi\|165924461\|ref\|ZP_02220293.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1420_YERE8 - UPF0352 protein YE1420 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 808...	118.0	[0..1]	[75..1]
gi\|238722272, gi... - gi\|77975403\|ref\|ZP_00830938.1\| COG3082: Uncharacterized protein conserved in bacteria [Yersinia fred...	118.0	[0..1]	[75..1]
gi\|15802743, gi\|... - gi\|15802743\|ref\|NP_288770.1\| hypothetical protein Z3446 [Escherichia coli O157:H7 EDL933], gi\|125165... YEJL_ECOLC - UPF0352 protein YejL OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yejL PE=3 SV=1 YEJL_SHISS - UPF0352 protein YejL OS=Shigella sonnei (strain Ss046) GN=yejL PE=3 SV=1 YEJL_ECODH - UPF0352 protein YejL OS=Escherichia coli (strain K12 / DH10B) GN=yejL PE=3 SV=1 YEJL_ECOL6 - UPF0352 protein yejL OS=Escherichia coli O6 GN=yejL PE=3 SV=1 gi\|188489801, gi... - gi\|75514473\|ref\|ZP_00736751.1\| COG3082: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|189375586, gi... - gi\|189375586\|gb\|EDU94002.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|75259661, gi\|... - gi\|75259661\|ref\|ZP_00730963.1\| COG3082: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194417531, gi... - gi\|194434202\|ref\|ZP_03066469.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|191165404, gi... - gi\|75231473\|ref\|ZP_00717842.1\| COG3082: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|170767353, gi... - gi\|170767353\|ref\|ZP_02901806.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|208727617, gi... - gi\|208807816\|ref\|ZP_03250153.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195935569 - gi\|195935569\|ref\|ZP_03080951.1\| hypothetical protein EscherichcoliO157_03772 [Escherichia coli O157:... gi\|85675296, gi\|... - gi\|89109005\|ref\|AP_002785.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|208738838, gi... - gi\|208818715\|ref\|ZP_03259035.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... YEJL_SHIBS - UPF0352 protein YejL OS=Shigella boydii serotype 4 (strain Sb227) GN=yejL PE=3 SV=1 gi\|208814353, gi... - gi\|208814353\|ref\|ZP_03255682.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|188016098, gi... - gi\|188016098\|gb\|EDU54220.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|227835595, gi... - gi\|227887245\|ref\|ZP_04005050.1\| hypothetical protein HMPREF0358_3837 [Escherichia coli 83972], gi\|22... YEJL_ECOBW - UPF0352 protein YejL OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yejL PE=3 SV=1 gi\|168765362, gi... - gi\|189364888\|gb\|EDU83304.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|242377826, gi... - gi\|251785553\|ref\|YP_002999857.1\| hypothetical protein B21_02076 [Escherichia coli BL21], gi\|24237782... gi\|189357629, gi... - gi\|189357629\|gb\|EDU76048.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254288963, gi... - gi\|254288963\|ref\|YP_003054711.1\| hypothetical protein ECD_02117 [Escherichia coli BL21(DE3)], gi\|253... gi\|194427239, gi... - gi\|75211605\|ref\|ZP_00711684.1\| COG3082: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|187771272, gi... - gi\|187771272\|gb\|EDU35116.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|253974103, gi... - gi\|254162202\|ref\|YP_003045310.1\| hypothetical protein ECB_02117 [Escherichia coli B str. REL606], gi... YEJL_ECOL6 - UPF0352 protein YejL OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yejL PE=3 SV=... YEJL_ECOHS - UPF0352 protein YejL OS=Escherichia coli O9:H4 (strain HS) GN=yejL PE=3 SV=1 gi\|168767812, gi... - gi\|189362801\|gb\|EDU81220.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|254593489, gi... - gi\|254794089\|ref\|YP_003078926.1\| hypothetical protein ECSP_3068 [Escherichia coli O157:H7 str. TW143... YEJL_ECO57 - UPF0352 protein YejL OS=Escherichia coli O157:H7 GN=yejL PE=3 SV=1 YEJL_SHIB3 - UPF0352 protein YejL OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yejL PE=3 SV=1 gi\|189371353, gi... - gi\|189371353\|gb\|EDU89769.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... EG12043 - UPF0352 family protein / Function unknown, UPF0352 family gi\|194424760, gi... - gi\|83588169\|ref\|ZP_00926794.1\| COG3082: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|168780041, gi... - gi\|189002136\|gb\|EDU71122.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... YEJL_ECOSE - UPF0352 protein YejL OS=Escherichia coli (strain SE11) GN=yejL PE=3 SV=1 YEJL_ECO5E - UPF0352 protein YejL OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yejL PE=3 SV=1 YEJL_ECO8A - UPF0352 protein YejL OS=Escherichia coli O8 (strain IAI1) GN=yejL PE=3 SV=1 gi\|217326981, gi... - gi\|217326981\|ref\|ZP_03443064.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YEJL_ECO55 - UPF0352 protein YejL OS=Escherichia coli (strain 55989 / EAEC) GN=yejL PE=3 SV=1 YEJL_ECO81 - UPF0352 protein YejL OS=Escherichia coli O81 (strain ED1a) GN=yejL PE=3 SV=1 EG12043 - UPF0352 family protein / Function unknown, UPF0352 family YEJL_ECOLI - UPF0352 protein yejL - Escherichia coli YEJL_ECOLU - UPF0352 protein YejL OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yejL PE=3 SV=1 gi\|15832333, gi\|... - gi\|15832333\|ref\|NP_311106.1\| hypothetical protein ECs3079 [Escherichia coli O157:H7 str. Sakai], gi\|...	118.0	[0..1]	[75..1]
Y2871_PHOLL - UPF0352 protein plu2871 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ... Y2871_PHOLL - UPF0352 protein plu2871 OS=Photorhabdus luminescens subsp. laumondii GN=plu2871 PE=3 SV=1	118.0	[0..1]	[75..1]
sp\|B7UFK4\|YEJL_ECO27 - UPF0352 protein yejL OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yejL PE=3 SV=1 YEJL_ECO27 - UPF0352 protein YejL OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yejL PE=3 SV=1 YEJL_ECO45 - UPF0352 protein YejL OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yejL PE=3 SV=1 YEJL_ECOL5 - UPF0352 protein YejL OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yejL PE=3 SV=1 YEJL_ECOSM - UPF0352 protein YejL OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yejL PE=3 SV=1 YEJL_ECOUT - UPF0352 protein YejL OS=Escherichia coli (strain UTI89 / UPEC) GN=yejL PE=3 SV=1 YEJL_ECO7I - UPF0352 protein YejL OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yejL PE=3 SV=1 gi\|237704662, gi... - gi\|237704662\|ref\|ZP_04535143.1\| yejL [Escherichia sp. 3_2_53FAA], gi\|226901028\|gb\|EEH87287.1\| yejL [... gi\|75243005, gi\|... - gi\|75243005\|ref\|ZP_00726711.1\| COG3082: Uncharacterized protein conserved in bacteria [Escherichia c...	117.0	[0..1]	[75..1]
gi\|238714827, gi... - gi\|77958522\|ref\|ZP_00822554.1\| COG3082: Uncharacterized protein conserved in bacteria [Yersinia berc...	117.0	[0..1]	[75..1]
YEJL_SHIDS - UPF0352 protein YejL OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yejL PE=3 SV=1	116.0	[0..1]	[75..1]
YEJL_ECO24 - UPF0352 protein YejL OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yejL PE=3 SV=1	116.0	[0..1]	[75..1]
Y3121_VIBVU - UPF0352 protein VV1_3121 OS=Vibrio vulnificus GN=VV1_3121 PE=3 SV=2	116.0	[0..1]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQISRYSNE QVEQLLAELL NVLEKHKAPT DLSLMVLGNM VTNLINTSIA PAQRQAIANS  60
   61 FASALQSSIN EDKAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	2jrxA
Description:	No description for 2jrxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits