YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3253120, gi\|7...
Organism:	Homo sapiens
Length:	813 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3253120, gi|7....

Description	E-value	Query Range	Subject Range
gi\|73987455 - gi\|73987455\|ref\|XP_542173.2\| PREDICTED: similar to CG1676-PA [Canis familiaris]	4.0E-76	[3..636]	[108..733]
gi\|89057013, gi\|... - gi\|89057013\|ref\|XP_950028.1\| PREDICTED: similar to cactin CG1676-PA isoform 8 [Homo sapiens], gi\|890... gi\|225000278, gi... - gi\|225000278\|gb\|AAI72549.1\| Chromosome 19 open reading frame 29 [synthetic construct], gi\|162318868\|...	3.0E-75	[20..636]	[142..758]
gi\|114674641 - gi\|114674641\|ref\|XP_001135512.1\| PREDICTED: chromosome 19 open reading frame 29 [Pan troglodytes]	7.0E-73	[20..636]	[165..779]
CATIN_MOUSE - Cactin OS=Mus musculus GN=Cactin PE=1 SV=2	4.0E-71	[1..636]	[145..772]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	4.0E-64	[3..553]	[1967..2487]

Back

Predicted Domain #1

Region A:
Residues: [1-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSQSPRAAAA ALSQQQSLQE RLRLREERKQ QEELMKAFET PEEKRARRLA KKEAKERKKR  60
   61 EKMGWGEEYM GYTNTDNPFG DNNLLGTFIW NKALEKKGIS HLEEKELKER NKRIQEDNRL 120
  121 ELQKVKQLRL EREREKAMRE QELEMLQREK EAEHFKTWEE QEDNFHLQQA KLRSKIRIRD 180
  181 GRAKPIDLLA KYISAEDDDL AVEMHEPYTF LNGLTVADME DLLEDIQVYM ELEQGKNADF 240
  241 WRDMTTITED EISKLRKLEA SGKGPGERRE GVNASVSSDV QSVFKGKTYN QLQVIFQGIE 300
  301 GKIRAGGPNL DMGYWESLLQ QLRAHMARAR LRERHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [337-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVLRQKLYKL KQEQGVESEP LFPILKQEPQ SPSRSLEPED AAPTPPGPSS EGGPAEAEVD  60
   61 GATPTEGDGD GDGEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [412-813]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGEGEAVLME EDLIQQSLDD YDAGRYSPRL LTAHELPLDA HVLEPDEDLQ RLQLSRQQLQ  60
   61 VTGDASESAE DIFFRRAKEG MGQDEAQFSV EMPLTGKAYL WADKYRPRKP RFFNRVHTGF 120
  121 EWNKYNQTHY DFDNPPPKIV QGYKFNIFYP DLIDKRSTPE YFLEACADNK DFAILRFHAG 180
  181 PPYEDIAFKI VNREWEYSHR HGFRCQFANG IFQLWFHFKR YRYRRPGPCW RPIRHCRRDP 240
  241 LWTPTLCRDW PPTHPVLAGG VHFPAAGIPP PGLLTGPWSM RPVTPSFAHI RTVAPSHSPF 300
  301 SGQEGRGPHG CHSPGRSGPA GRLVLQHPTG TSPTEAKRKV PPGPPEGHPT SPVTSPRPPT 360
  361 APPRHPASSG NSSVCFSKKT CRWEKKSFVL MELAYWQDRM FF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	1deqA
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits