YRC Public Data Repository - Protein Structure Prediction

Protein:	COQ9
Organism:	Homo sapiens
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ9.

Description	E-value	Query Range	Subject Range
COQ9_MOUSE - Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Mus musculus GN=Coq9 PE=1 SV=1	2.0E-98	[2..318]	[3..313]
gi\|51259441, gi\|... - gi\|75775127\|gb\|AAI04703.1\| Coq9 protein [Rattus norvegicus], gi\|51259441\|gb\|AAH79370.1\| Coq9 protein...	3.0E-96	[2..318]	[1..310]
gi\|109111560 - gi\|109111560\|ref\|XP_001112330.1\| PREDICTED: similar to CG30493-PB isoform 3 [Macaca mulatta]	9.0E-95	[6..318]	[7..319]
gi\|114662768, gi... - gi\|114662770\|ref\|XP_001146454.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi\|114...	6.0E-94	[6..318]	[7..319]
COQ9_BOVIN - Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Bos taurus GN=COQ9 PE=2 SV=1	9.0E-87	[2..318]	[3..319]
gi\|73949780 - gi\|73949780\|ref\|XP_535284.2\| PREDICTED: similar to CG30493-PB isoform 1 [Canis familiaris]	5.0E-86	[6..318]	[8..320]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAVSGAL GRAGWRLLQL RCLPVARCRQ ALVPRAFHAS AVGLRSSDEQ KQQPPNSFSQ  60
   61 QHSETQGAEK PDPESSHSPP RYTDQGGEEE EDYESEEQLQ HRILTAALEF VPAHGWTAEA 120
  121 IAEGAQSLGL SSAAASMFGK DGSELILHFV TQCNTRLTRV LEEEQKLVQL GQAEKRKTDQ 180
  181 FLRDAVETRL RMLIPYIEHW PRALSILMLP HNIPSSLSLL TSMVDDMWHY AGDQSTDFNW 240
  241 YTRRAMLAAI YNTTELVMMQ DSSPDFEDTW RFLENRVNDA MNMGHTAKQV KSTGEALVQG 300
  301 LMGAAVTLKN LTGLNQRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	2oflA
Description:	No description for 2oflA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits