YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57208456, gi\|...
Organism:	Homo sapiens
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57208456, gi|....

Description	E-value	Query Range	Subject Range
gi\|57208454 - gi\|57208454\|emb\|CAI42394.1\| tRNA methyltransferase 11 homolog (S. cerevisiae) [Homo sapiens]	262.0	[0..1]	[257..1]
gi\|109072797 - gi\|109072797\|ref\|XP_001107281.1\| PREDICTED: similar to RIKEN cDNA 2410075D05 isoform 2 [Macaca mulat...	261.0	[0..1]	[257..1]
TRM11_PONPY, CF0... - tRNA guanosine-2'-O-methyltransferase TRM11 homolog - Pongo pygmaeus (Orangutan), Putative RNA methy... TRM11_PONAB - tRNA (guanine(10)-N2)-methyltransferase homolog OS=Pongo abelii GN=TRMT11 PE=2 SV=1	260.0	[0..1]	[257..1]
gi\|114051171 - gi\|114051171\|ref\|NP_082880.2\| tRNA methyltransferase 11 [Mus musculus]	259.0	[0..1]	[257..1]
gi\|114609173 - gi\|114609173\|ref\|XP_001166097.1\| PREDICTED: chromosome 6 open reading frame 75 isoform 5 [Pan troglo...	256.0	[0..1]	[257..1]
TRM11_RAT - tRNA (guanine(10)-N2)-methyltransferase homolog OS=Rattus norvegicus GN=Trmt11 PE=2 SV=1	256.0	[0..1]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSCTLNRY LLLMAQEHLE FRLPEIKSLL LLFGGQFASS QETYGKSPFW ILSIPSEDIA  60
   61 RNLMKRTVCA KSIFELWGHG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSPEELYSSL KNYPVEKMVP FLHSDSTYKI KIHTFNKTLT QEEKIKRIDA LEFLPFEGKV  60
   61 NLKKPQHVFS VLEDYGLDPN CIPENPHNIY FGRWIADGQR ELIESYSVKK RHFIGNTSMD 120
  121 AGLSFIMANH GKVKENDIVF DPFVGTGGLL IACAHFGAYV YGTDIDYNTV HGLACST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	1g60A
Description:	Methyltransferase mboII
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits