YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS26
Organism:	Homo sapiens
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS26.

Description	E-value	Query Range	Subject Range
gi\|109092700 - gi\|109092700\|ref\|XP_001115024.1\| PREDICTED: similar to mitochondrial ribosomal protein S26 [Macaca m...	4.0E-57	[1..205]	[1..205]
RT26_MOUSE - 28S ribosomal protein S26, mitochondrial OS=Mus musculus GN=Mrps26 PE=1 SV=1	1.0E-54	[1..199]	[1..199]
RT26_RAT - 28S ribosomal protein S26, mitochondrial OS=Rattus norvegicus GN=Mrps26 PE=1 SV=1	2.0E-54	[1..199]	[1..199]
RT26_BOVIN - 28S ribosomal protein S26, mitochondrial OS=Bos taurus GN=MRPS26 PE=1 SV=1	2.0E-51	[1..205]	[1..205]
gi\|73991982 - gi\|73991982\|ref\|XP_534365.2\| PREDICTED: similar to mitochondrial ribosomal protein S26 [Canis famili...	4.0E-51	[1..205]	[1..206]
gi\|148229525, gi... - gi\|46249622\|gb\|AAH68863.1\| MGC82245 protein [Xenopus laevis], gi\|148229525\|ref\|NP_001084645.1\| hypot...	3.0E-50	[17..199]	[16..198]
CE29031 - status:Partially_confirmed UniProt:Q95QS3 protein_id:AAK95873.1	3.0E-50	[7..195]	[35..209]
gi\|114680643 - gi\|114680643\|ref\|XP_001160081.1\| PREDICTED: mitochondrial ribosomal protein S26 isoform 1 [Pan trogl...	6.0E-49	[1..161]	[1..161]
gi\|157776610 - gi\|157776610\|ref\|XP_001666371.1\| hypothetical protein CBG21170 [Caenorhabditis briggsae AF16] gi\|39586535, gi\|... - gi\|39586535\|emb\|CAE73662.1\| Hypothetical protein CBG21170 [Caenorhabditis briggsae], gi\|187022809\|em...	3.0E-46	[7..195]	[30..204]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRALSRLGA GTPCRPRAPL VLPARGRKTR HDPLAKSKIE RVNMPPAVDP AEFFVLMERY  60
   61 QHYRQTVRAL RMEFVSEVQR KVHEARAGVL AERKALKDAA EHRELMAWNQ AENRRLHELR 120
  121 IARLRQEERE QEQRQALEQA RKAEEVQAWA QRKEREVLQL QEEVKNFITR ENLEARVEAA 180
  181 LDSRKNYNWA ITREGLVVRP QRRDS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.55
Match:	1rh1A
Description:	crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits