YRC Public Data Repository - Protein Structure Prediction

Protein:	RDH14
Organism:	Homo sapiens
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDH14.

Description	E-value	Query Range	Subject Range
gi\|115497706, gi... - gi\|115497706\|ref\|NP_001068701.1\| retinol dehydrogenase 14 (all-trans/9-cis/11-cis) [Bos taurus], gi\|...	1.0E-69	[1..336]	[1..336]
gi\|73979779 - gi\|73979779\|ref\|XP_540096.2\| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis) is...	1.0E-67	[15..336]	[15..336]
gi\|109102083 - gi\|109102083\|ref\|XP_001093556.1\| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis...	6.0E-67	[18..336]	[18..336]
RDH14_MOUSE - Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1	3.0E-66	[22..336]	[23..334]
gi\|109479133, gi... - gi\|62650478\|ref\|XP_576003.1\| PREDICTED: similar to alcohol dehydrogenase PAN2 [Rattus norvegicus], g...	2.0E-65	[22..336]	[23..334]
gi\|146296617, gi... - gi\|82501013\|ref\|ZP_00886394.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Caldicellulosiruptor sacc...	5.0E-64	[38..311]	[1..248]
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	8.0E-64	[40..308]	[2..243]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	1.0E-63	[41..311]	[2..246]
gi\|168210762, gi... - gi\|170711222\|gb\|EDT23404.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens B st... gi\|110675446, gi... - gi\|110800799\|ref\|YP_695772.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens A... gi\|170660709, gi... - gi\|170660709\|gb\|EDT13392.1\| 3-oxoacyl- reductase [Clostridium perfringens E str. JGS1987], gi\|168207...	8.0E-63	[41..311]	[2..246]

Back

Predicted Domain #1

Region A:
Residues: [1-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVATAAAVL AALGGALWLA ARRFVGPRVQ RLRRGGDPGL MHGKTVLITG ANSGLGRATA  60
   61 AELLRLGARV IMGCRDRARA EEAAGQLRRE LRQAAECGPE PGVSGVGELI VRELDLASLR 120
  121 SVRAFCQEML QEEPRLDVLI NNAGIFQCPY MKTEDGFEMQ FGVNHLGHFL LTNLLLGLLK 180
  181 SSAPSRIVVV SSKLYKYGDI NFDDLNSEQS YNKSFCYSRS KLANILFTRE LARRLEGTNV 240
  241 TVNVLHPGIV RTNLGRHIHI PLLVKPLFNL VSWAFFKTPV EGAQTSIYLA SSPEVEGVSG 300
  301 RYFGDCKEEE LLPKAMDESV ARKLWDISEV MVGLLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	2p68A
Description:	No description for 2p68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits