YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109476085, gi...
Organism:	Rattus norvegicus
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109476085, gi....

Description	E-value	Query Range	Subject Range
gi\|109086473 - gi\|109086473\|ref\|XP_001088006.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co...	154.0	[0..1]	[85..131]
gi\|73999401 - gi\|73999401\|ref\|XP_851609.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain contai...	148.0	[0..1]	[85..76]
CHCH7_MACFA - Coiled-coil-helix-coiled-coil-helix domain-containing protein 7 OS=Macaca fascicularis GN=CHCHD7 PE=...	139.0	[0..1]	[85..1]
gi\|119607184, gi... - gi\|58761514\|ref\|NP_001011668.1\| coiled-coil-helix-coiled-coil-helix domain containing 7 isoform b [H...	138.0	[0..1]	[85..26]
CHCH7_BOVIN - Coiled-coil-helix-coiled-coil-helix domain-containing protein 7 OS=Bos taurus GN=CHCHD7 PE=3 SV=1	131.0	[0..1]	[85..1]
gi\|74213759 - gi\|74213759\|dbj\|BAC25396.2\| unnamed protein product [Mus musculus]	108.0	[0..1]	[71..1]
CHCH7_XENLA - Coiled-coil-helix-coiled-coil-helix domain-containing protein 7 OS=Xenopus laevis GN=chchd7 PE=3 SV=...	97.0	[0..6]	[85..5]
CG4186-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG4186 (CG4186, FBgn0040634). It is a protein...	96.0	[0..14]	[76..11]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMVTRRLRD PDINPCLSES DASTRCMDEN NYDRERCSSY FLKYKNCRRF WNSVMIQRRQ  60
   61 NGVQPSMPTA AERDEILGAM QKMPY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.13
Match:	1occH
Description:	Cytochrome c oxidase subunit h
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits