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View Structure Prediction Details

Protein: PEX11A
Organism: Homo sapiens
Length: 247 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX11A.

Description E-value Query
Range
Subject
Range
gi|60835489 - gi|60835489|gb|AAX37141.1| peroxisomal biogenesis factor 11A [synthetic construct]
8.0E-75 [1..247] [1..247]
gi|55642619 - gi|55642619|ref|XP_510585.1| PREDICTED: peroxisomal biogenesis factor 11A [Pan troglodytes]
2.0E-74 [1..247] [1..247]
PX11A_RAT - Peroxisomal membrane protein 11A OS=Rattus norvegicus GN=Pex11a PE=1 SV=1
2.0E-71 [1..247] [1..246]
gi|73951475 - gi|73951475|ref|XP_545854.2| PREDICTED: similar to peroxisomal biogenesis factor 11A [Canis familiar...
4.0E-70 [1..245] [1..245]
gi|109082324 - gi|109082324|ref|XP_001093381.1| PREDICTED: similar to peroxisomal biogenesis factor 11A [Macaca mul...
6.0E-70 [1..247] [1..247]
PX11A_MOUSE - Peroxisomal membrane protein 11A OS=Mus musculus GN=Pex11a PE=1 SV=1
6.0E-70 [1..247] [1..246]
gi|37590287, gi|... - gi|37590287|gb|AAH59330.1| MGC69071 protein [Xenopus laevis], gi|147903439|ref|NP_001080024.1| hypot...
8.0E-66 [1..245] [1..245]
PX11A_BOVIN - Peroxisomal membrane protein 11A OS=Bos taurus GN=PEX11A PE=2 SV=1
1.0E-65 [1..247] [1..247]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAFTRFTNQ TQGRDRLFRA TQYTCMLLRY LLEPKAGKEK VVMKLKKLES SVSTGRKWFR  60
   61 LGNVVHAIQA TEQSIHATDL VPRLCLTLAN LNRVIYFICD TILWVRSVGL TSGINKEKWR 120
  121 TRAAHHYYYS LLLSLVRDLY EISLQMKRVT CDRAKKE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [158-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSASQDPLWF SVAEEETEWL QSFLLLLFRS LKQHPPLLLD TVKNLCDILN PLDQLGIYKS  60
   61 NPGIIGLGGL VSSIAGMITV AYPQMKLKTR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle