YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|113638749, gi...
Organism:	Oryza sativa Japonica Group
Length:	1004 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113638749, gi....

Description	E-value	Query Range	Subject Range
gi\|92886171 - gi\|92886171\|gb\|ABE88173.1\| Glycosyl hydrolases family 38 C-terminal domain, putative [Medicago trunc...	913.0	[0..1]	[1004..7]
gi\|197101359 - gi\|197101359\|ref\|NP_001127406.1\| mannosidase, alpha, class 2B, member 1 [Pongo abelii] gi\|55729221 - gi\|55729221\|emb\|CAH91346.1\| hypothetical protein [Pongo abelii]	886.0	[0..21]	[1001..47]
MA2B1_MACFA - Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1	884.0	[0..26]	[1001..52]
gi\|79598781, gi\|... - gi\|79598781\|ref\|NP_851037.2\| glycosyl hydrolase family 38 protein [Arabidopsis thaliana], gi\|2319818...	883.0	[0..6]	[1004..5]
gi\|3522867 - gi\|3522867\|gb\|AAC34130.1\| lysosomal alpha-mannosidase [Homo sapiens]	882.0	[0..26]	[1001..51]

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Predicted Domain #1

Region A:
Residues: [1-1004]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSALVV VVAVLALAEA AVAFSGYNTS AGAVAGKLNV HLVPHSHDDV GWLKTIDQYF  60
   61 VGTNNSIQGA CVMNTLDSVV DALILDPARK FVFAEQAFFQ RWWAEKSPKI QAIVHKLVDS 120
  121 GQLEFINGGW CMHDEAAVHY IDMIDQTTLG HRVIKKQFNK IPRAGWQIDP FGHSAVQGYL 180
  181 LGAELGFDSM HFARIDYQDR AKRKGDKGLE VIWRGSRTFG SSSQIFTNAF PVHYSPPDGF 240
  241 GFEIFDDFVP VQDDMLLFDY NLKERVNDFV AAALKQANVT RTNHIMWTMG DDFNYQYAES 300
  301 WFRNMDRLIN YVNKDGRVHA LYSTPSIYTD AKHASNESWP LKYDDYFPYA DAKNAYWTGY 360
  361 FTSRPTFKRY IRMISGYYLA ARQLEFLVGR SSLGLFTSSL EDPLGIAQHH DAVSGTAKQH 420
  421 TTDDYSKRLA IGVSQVEKGV NTALSCLTSS KGTCTATKFS QCQLLNISYC PSTEEGISSA 480
  481 KSLVIVVYNP LGWERSDFVR VPVNDANLIV KTSDGTSLES QLVEVDIVTA RLRKLYIKAY 540
  541 LGITSDKPPK YWLVFQASVP PLGWNTYFIS KSTGTGSNGM GYVSTMVSPS NDTIEIGPGP 600
  601 LKMSYSSKSG QLKRMFNSIS AVDLPIQQSF LWYASSTGDS EDSQASGAYI FRPNRTTPTI 660
  661 VSGMAPLKVI HGPLVDEVHQ QFSSWIYQVT RLYKNKEHAE VEYTIGPIPV DDDDDIGKEV 720
  721 VTRLTTNMAT NKIFYTDSNG RDFLERVRNH RDDWDLNLSQ PVAGNYYPVN QGIYVADGKY 780
  781 ELSVLVDHAV GASSIQDGQI EVMLHRRLSA DDGRGVGEPL NEVVCVDQKC DGLVARATYY 840
  841 INVNKKGHGA HWRRTYSQQV YSPFLVAFAH EDERSWKSNN IAKASTVEGN YSLPDNVAII 900
  901 TLQSLDDGTT LLRLAHLFQA QEDTQYSVMA KVELRKLFGK RIIKDLTETS LSANQKKSEM 960
  961 KKLNWRVTGE SKTDPAPLKG GPVDSHALVV ELGPMEIRTF LLKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ps3A
Description:	Golgi alpha-mannosidase II in complex with kifunensine
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits