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View Structure Prediction Details

Protein: gi|215704801, gi...
Organism: Oryza sativa Japonica Group
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215704801, gi....

Description E-value Query
Range
Subject
Range
gi|92885240 - gi|92885240|gb|ABE87727.1| Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase [Medicago...
317.0 [0..1] [386..189]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTSGDTLS ESSTLSVYRD ELFAMADIVT PNVKEASRLL GGVSLRTVSD MRNAAESIYK  60
   61 FGPKHVLVKG GDMLESSDAT DVFFDGKEFI ELHAHRIKTH NTHGTGCTLA SCIASELAKG 120
  121 ATMLHAVQVA KNFVESALHH SKDLVVGNGP QGPFDHLFKL KCPPYNVGSQ PSFKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1jxhA
Description: 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphomethylpyrimidine kinase activity 4.17236703133163 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 2.49796023165143 bayes_pls_golite062009
catalytic activity 2.11518580948187 bayes_pls_golite062009
kinase activity 1.91132546835432 bayes_pls_golite062009
transferase activity 1.65599843675995 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.53929419091344 bayes_pls_golite062009
thiamin-phosphate diphosphorylase activity 1.41576214895876 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.5044241713613 bayes_pls_golite062009
hydroxyethylthiazole kinase activity 0.44128654727966 bayes_pls_golite062009
binding 0.0820659188236261 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [176-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQLFLYAVTD SGMNKKWGRS IKEAVQAAIE GGATIVQLRE KDSETREFLE AAKACMEICK  60
   61 SSGVPLLIND RVDIALACNA DGVHVGQLDM SAHEVRELLG PGKIIGVSCK TPAQAQQAWN 120
  121 DGADYIGCGG VFPTSTKANN PTLGFDGLKT VCLASKLPVV AIGGINASNA GSVMELGLPN 180
  181 LKGVAVVSAL FDRPSVVAET RNMKSILTNT SRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.69897
Match: 1xi3A
Description: Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
thiamin-phosphate diphosphorylase activity 6.04450222340788 bayes_pls_golite062009
catalytic activity 2.31352397210218 bayes_pls_golite062009
phosphomethylpyrimidine kinase activity 2.16632642989285 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.16976945211093 bayes_pls_golite062009
transferase activity 1.16478613213801 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 0.63318404518052 bayes_pls_golite062009

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